RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 OR4A4PQ8NGN8 299 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 WDR54Q9H977 334 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 AHCTF1Q8WYP5 2266 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 ZNF785A8K8V0 405 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 PATE3B3GLJ2 98 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 M0R296 226 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 NDUFB4O95168 129 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 HBZP02008 142 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 HOXA5P20719 270 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 EFNB1P98172 346 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 C19orf48Q6RUI8 117 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 IL19Q9UHD0 177 aa10.02□□□□□ -0.81
VPS39-201ENST00000318006 IGHV3-43A0A0B4J1X8 118 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 TRGV8A0A0C4DH27 118 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 PIN1P1O15428 100 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 IGHV3-43DP0DP04 118 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 SLC25A34Q6PIV7 304 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 SSX8Q7RTT4 187 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 ZBTB34Q8NCN2 500 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 MRGPRDQ8TDS7 321 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 AQP3Q92482 292 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 ADTRPQ96IZ2 230 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 HDHD3Q9BSH5 251 aaPredicted RBP10.01□□□□□ -0.81
VPS39-201ENST00000318006 MRPL18Q9H0U6 180 aaKnown RBP10.01□□□□□ -0.81
VPS39-201ENST00000318006 PIPOXQ9P0Z9 390 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 CCL3P10147 92 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 PSG2P11465 335 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 ORM2P19652 201 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 FUT5Q11128 374 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 TGIF1Q15583 401 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 ZNF124Q15973 351 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 C1orf100Q5SVJ3 147 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 CXorf67Q86X51 503 aaPredicted RBP10.01□□□□□ -0.81
VPS39-201ENST00000318006 OR52L2PQ8NGH6 319 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 OR1K1Q8NGR3 316 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 IL36GQ9NZH8 169 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 SBF1O95248 1867 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 TRBV5-7A0A0A0MS05 114 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 RPL36A-HNRNPH2H7BZ11 118 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 SRSF9Q13242 221 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS39-201ENST00000318006 MTURNQ8N3F0 131 aa10.01□□□□□ -0.81
VPS39-201ENST00000318006 FCGR3AP08637 254 aa10□□□□□ -0.81
VPS39-201ENST00000318006 PNPLA5Q7Z6Z6 429 aaPredicted RBP10□□□□□ -0.81
VPS39-201ENST00000318006 AGAP20933 346 aa10□□□□□ -0.81
VPS39-201ENST00000318006 ERVFRD-1P60508 538 aa10□□□□□ -0.81
VPS39-201ENST00000318006 CTAG1AP78358 180 aa10□□□□□ -0.81
VPS39-201ENST00000318006 PIGYQ3MUY2 71 aa10□□□□□ -0.81
VPS39-201ENST00000318006 OR2M3Q8NG83 312 aa10□□□□□ -0.81
VPS39-201ENST00000318006 TET1Q8NFU7 2136 aa10□□□□□ -0.81
VPS39-201ENST00000318006 C21orf140B9A014 251 aa10□□□□□ -0.81
VPS39-201ENST00000318006 PMELP40967 661 aa10□□□□□ -0.81
VPS39-201ENST00000318006 UQCRFS1P47985 274 aa10□□□□□ -0.81
VPS39-201ENST00000318006 HERVK_113P61574 105 aa10□□□□□ -0.81
VPS39-201ENST00000318006 HERPUD1Q15011 391 aa10□□□□□ -0.81
VPS39-201ENST00000318006 PMS2CLQ68D20 193 aa10□□□□□ -0.81
VPS39-201ENST00000318006 TEPPQ6URK8 271 aa10□□□□□ -0.81
VPS39-201ENST00000318006 GFRALQ6UXV0 394 aa10□□□□□ -0.81
VPS39-201ENST00000318006 TMEM38BQ9NVV0 291 aa10□□□□□ -0.81
VPS39-201ENST00000318006 ZDHHC8Q9ULC8 765 aa10□□□□□ -0.81
VPS39-201ENST00000318006 TRIOBPQ9H2D6 2365 aa10□□□□□ -0.81
VPS39-201ENST00000318006 CASP8AP2Q9UKL3 1982 aa10□□□□□ -0.81
VPS39-201ENST00000318006 PRSS12P56730 875 aa10□□□□□ -0.81
VPS39-201ENST00000318006 HIKESHIQ53FT3 197 aa10□□□□□ -0.81
VPS39-201ENST00000318006 SLC36A1Q7Z2H8 476 aa10□□□□□ -0.81
VPS39-201ENST00000318006 NGFRP08138 427 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 NMUP48645 174 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 FOXC1Q12948 553 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 SLC35E4Q6ICL7 350 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 TMEM222Q9H0R3 208 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 PARLQ9H300 379 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 NPTNQ9Y639 398 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 RP1P56715 2156 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 H3BVH4 76 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 GNG10P50151 68 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 STXBP6Q8NFX7 210 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 RBM14Q96PK6 669 aaKnown RBP9.99□□□□□ -0.81
VPS39-201ENST00000318006 OPN3Q9H1Y3 402 aaPredicted RBP9.99□□□□□ -0.81
VPS39-201ENST00000318006 TUBA4BQ9H853 241 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 SEBOXQ9HB31 216 aaPredicted RBP9.99□□□□□ -0.81
VPS39-201ENST00000318006 MYOZ1Q9NP98 299 aaPredicted RBP9.99□□□□□ -0.81
VPS39-201ENST00000318006 C4orf51C9J302 202 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 UPK3AO75631 287 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 HIST1H1BP16401 226 aaKnown RBP9.99□□□□□ -0.81
VPS39-201ENST00000318006 OR8I2Q8N0Y5 310 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 OR10S1Q8NGN2 331 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 SLC25A33Q9BSK2 321 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 C5orf66Q9H5L9 145 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 SPTA1P02549 2419 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 OOEPA6NGQ2 149 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 CA11O75493 328 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 IFI6P09912 130 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 CCL2P13500 99 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 GLRX5Q86SX6 157 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 POC1AQ8NBT0 407 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 OR2Z1Q8NG97 314 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 OR1B1Q8NGR6 318 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 SCARF2Q96GP6 870 aaPredicted RBP9.99□□□□□ -0.81
VPS39-201ENST00000318006 DNAJC4Q9NNZ3 241 aa9.99□□□□□ -0.81
VPS39-201ENST00000318006 SHISA3A0PJX4 238 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 SPRY3O43610 288 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms