RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SGK494Q96LW2 274 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 DSPPQ9NZW4 1301 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 HPRT1P00492 218 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 TP53I13Q8NBR0 393 aaPredicted RBP12.12□□□□□ -0.47
CSPG4-201ENST00000308508 SRFP11831 508 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 PGFP49763 221 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 SELENOTP62341 195 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 IRF3Q14653 427 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 RTP5Q14D33 572 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 SOSTQ9BQB4 213 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 FOXQ1Q9C009 403 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 CISD1Q9NZ45 108 aaKnown RBP12.12□□□□□ -0.47
CSPG4-201ENST00000308508 HYAL3O43820 417 aaPredicted RBP12.12□□□□□ -0.47
CSPG4-201ENST00000308508 C2orf83Q53S99 150 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 CEACAM18A8MTB9 384 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 BHLHA15Q7RTS1 189 aaPredicted RBP12.12□□□□□ -0.47
CSPG4-201ENST00000308508 PARLQ9H300 379 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 KLK13Q9UKR3 277 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 BEND2Q8NDZ0 799 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 VSTM2LQ96N03 204 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 PHF7Q9BWX1 381 aaPredicted RBP12.12□□□□□ -0.47
CSPG4-201ENST00000308508 PQLC2LA1A4F0 135 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 WNT5BQ9H1J7 359 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 PHLDA3Q9Y5J5 127 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 TRAV8-7A0A075B6U6 113 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 HEATR1Q9H583 2144 aaKnown RBP12.11□□□□□ -0.47
CSPG4-201ENST00000308508 A1L4Q6 167 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 CDIPTO14735 213 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 GALNSP34059 522 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 ACER2Q5QJU3 275 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 LINC01465Q8N7H1 131 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 PGLYRP4Q96LB8 373 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 PPP1R17O96001 155 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 HDHD3Q9BSH5 251 aaPredicted RBP12.11□□□□□ -0.47
CSPG4-201ENST00000308508 QTRT1Q9BXR0 403 aaKnown RBP12.11□□□□□ -0.47
CSPG4-201ENST00000308508 A0A1W2PQD3 144 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 LIPFP07098 398 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 KLK2P20151 261 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 NIT1Q86X76 327 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 PLA2G3Q9NZ20 509 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 JKAMPQ9P055 326 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 MOSPD3O75425 235 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 SRIP30626 198 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 ZNF660Q6AZW8 331 aaPredicted RBP12.11□□□□□ -0.47
CSPG4-201ENST00000308508 CCDC144NLQ6NUI1 221 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 RSPO2Q6UXX9 243 aaPredicted RBP12.11□□□□□ -0.47
CSPG4-201ENST00000308508 GALNT14Q96FL9 552 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 MCM3APO60318 1980 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 TDRD15B5MCY1 1934 aaKnown RBP12.11□□□□□ -0.47
CSPG4-201ENST00000308508 C7orf71A4D174 169 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 MEF2CQ06413 473 aaPredicted RBP12.11□□□□□ -0.47
CSPG4-201ENST00000308508 RRN3P1Q2M238 152 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 DMRTA1Q5VZB9 504 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 OR4A5Q8NH83 315 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 HEXA-AS1Q9H8Q6 139 aa12.11□□□□□ -0.47
CSPG4-201ENST00000308508 TUBGCP6Q96RT7 1819 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 LIPT2A6NK58 231 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 J3QT63 122 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 GAB4Q2WGN9 574 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 PQLC2Q6ZP29 291 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 KCNE5Q9UJ90 142 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 EDIL3O43854 480 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 VSIG8P0DPA2 414 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 GLIPR1P48060 266 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 RAB9AP51151 201 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 DLX6P56179 175 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 EBLN2Q6P2I7 272 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 TREM2Q9NZC2 230 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 ATG4DQ86TL0 474 aaPredicted RBP12.1□□□□□ -0.47
CSPG4-201ENST00000308508 C16orf92Q96LL3 132 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 C11orf68Q9H3H3 251 aaKnown RBP12.1□□□□□ -0.47
CSPG4-201ENST00000308508 ANKRD36A6QL64 1941 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 TMIGD3P0DMS9 266 aaPredicted RBP12.1□□□□□ -0.47
CSPG4-201ENST00000308508 TMEM177Q53S58 311 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 METTL26Q96S19 204 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 OR5AC2Q9NZP5 309 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 SPNS2Q8IVW8 549 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 STPG3Q8N7X2 389 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 RNF7Q9UBF6 113 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 FAM216AQ8WUB2 273 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 RND1Q92730 232 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 SFRP2Q96HF1 295 aa12.1□□□□□ -0.47
CSPG4-201ENST00000308508 EPHA8P29322 1005 aaPredicted RBP12.1□□□□□ -0.47
CSPG4-201ENST00000308508 APELAP0DMC3 54 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 PNLIPP16233 465 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 NEUROG1Q92886 237 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 METTL12A8MUP2 240 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 PATE4P0C8F1 98 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 OTX1P32242 354 aaPredicted RBP12.09□□□□□ -0.47
CSPG4-201ENST00000308508 RUNX1Q01196 453 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 TM4SF20Q53R12 229 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 CTAG1AP78358 180 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 HES3Q5TGS1 186 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 OR2H1Q9GZK4 316 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 CD3EP07766 207 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 OR4C13Q8NGP0 309 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 ZNF418Q8TF45 676 aaPredicted RBP12.09□□□□□ -0.47
CSPG4-201ENST00000308508 MYEOVQ96EZ4 313 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 C17orf51A8MQB3 221 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 MPTX1A8MV57 137 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms