RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 OR4S2Q8NH73 311 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 HES4Q9HCC6 221 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 FAM90A26D6RGX4 464 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 MT-ND6P03923 174 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 HIST1H1BP16401 226 aaKnown RBP16.7■□□□□ 0.26
USP48-201ENST00000308271 ETFRF1Q6IPR1 90 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 ZNF501Q96CX3 271 aaPredicted RBP16.7■□□□□ 0.26
USP48-201ENST00000308271 TMEM191AQ9H0A3 160 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 CLN8Q9UBY8 286 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 TRAV39A0A0B4J263 110 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 A0A0J9YW62 118 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 TGIF2LXQ8IUE1 241 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 SSMEM1Q8WWF3 244 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 TMEM230Q96A57 120 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 RNF2Q99496 336 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 SRSF10O75494 262 aaKnown RBP16.7■□□□□ 0.26
USP48-201ENST00000308271 NDUFB4O95168 129 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 PSG5Q15238 335 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 C1QL2Q7Z5L3 287 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 OR4B1Q8NGF8 309 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 TMEM56Q96MV1 263 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 TP53RKQ96S44 253 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 EGLN1Q9GZT9 426 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 RBKSQ9H477 322 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 GSX1Q9H4S2 264 aaPredicted RBP16.7■□□□□ 0.26
USP48-201ENST00000308271 RPRMQ9NS64 109 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 HIF1ANQ9NWT6 349 aa16.7■□□□□ 0.26
USP48-201ENST00000308271 BRWD3Q6RI45 1802 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 TCF21O43680 179 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 CD99P14209 185 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 CAMPP49913 170 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 CEACAM21Q3KPI0 293 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 ASPHD2Q6ICH7 369 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 ZPBPQ9BS86 351 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 DECR2Q9NUI1 292 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 TNS1Q9HBL0 1735 aaKnown RBP16.69■□□□□ 0.26
USP48-201ENST00000308271 SARAFQ96BY9 339 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 ZDHHC8Q9ULC8 765 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 TET1Q8NFU7 2136 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 TGFBR3LH3BV60 316 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 NDUFA2O43678 99 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 OR1C1Q15619 314 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 OR2Y1Q8NGV0 311 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 Q8WTZ3 238 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 ZSWIM8A7E2V4 1837 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 C17orf51A8MQB3 221 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 MPDU1O75352 247 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 HAND1O96004 215 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 CD1BP29016 333 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 HLA-BQ31612 363 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 NGBQ9NPG2 151 aa16.69■□□□□ 0.26
USP48-201ENST00000308271 ZDBF2Q9HCK1 2354 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 KIF26BQ2KJY2 2108 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 SERTM2A0A1B0GWG4 89 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 AGAP20933 346 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 SNAI3Q3KNW1 292 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 MRPL54Q6P161 138 aaKnown RBP16.68■□□□□ 0.26
USP48-201ENST00000308271 LYG1Q8N1E2 194 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 CYTL1Q9NRR1 136 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 CBLN4Q9NTU7 201 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 CDIPTO14735 213 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 FAM157CP0CG43 387 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 MPLP40238 635 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 CASP6P55212 293 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 UBE2L3P68036 154 aaKnown RBP16.68■□□□□ 0.26
USP48-201ENST00000308271 HIST3H3Q16695 136 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 ADTRPQ96IZ2 230 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 DOCK6Q96HP0 2047 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 SRSF4Q08170 494 aaKnown RBP16.68■□□□□ 0.26
USP48-201ENST00000308271 PARLQ9H300 379 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 PROCRQ9UNN8 238 aa16.68■□□□□ 0.26
USP48-201ENST00000308271 RAMP1O60894 148 aa16.67■□□□□ 0.26
USP48-201ENST00000308271 CNIH1O95406 144 aa16.67■□□□□ 0.26
USP48-201ENST00000308271 MST1P26927 711 aa16.67■□□□□ 0.26
USP48-201ENST00000308271 SLC25A5P05141 298 aaKnown RBP16.67■□□□□ 0.26
USP48-201ENST00000308271 PET117Q6UWS5 81 aa16.67■□□□□ 0.26
USP48-201ENST00000308271 PAQR4Q8N4S7 273 aaPredicted RBP16.67■□□□□ 0.26
USP48-201ENST00000308271 ABHD3Q8WU67 409 aa16.67■□□□□ 0.26
USP48-201ENST00000308271 IGKV1D-43A0A0B4J1Z2 117 aa16.67■□□□□ 0.26
USP48-201ENST00000308271 EPHA8P29322 1005 aaPredicted RBP16.67■□□□□ 0.26
USP48-201ENST00000308271 OR1L4Q8NGR5 311 aa16.67■□□□□ 0.26
USP48-201ENST00000308271 LSM10Q969L4 123 aaKnown RBP16.67■□□□□ 0.26
USP48-201ENST00000308271 MEX3AA1L020 520 aaKnown RBP16.67■□□□□ 0.26
USP48-201ENST00000308271 ZNF818PQ6ZRF7 136 aa16.66■□□□□ 0.26
USP48-201ENST00000308271 CFHR5Q9BXR6 569 aa16.66■□□□□ 0.26
USP48-201ENST00000308271 TRGV5A0A0B4J1U4 118 aa16.66■□□□□ 0.26
USP48-201ENST00000308271 TEPPQ6URK8 271 aa16.66■□□□□ 0.26
USP48-201ENST00000308271 CXXC4Q9H2H0 198 aa16.66■□□□□ 0.26
USP48-201ENST00000308271 SPINK2P20155 84 aa16.66■□□□□ 0.26
USP48-201ENST00000308271 FOXL2P58012 376 aa16.66■□□□□ 0.26
USP48-201ENST00000308271 C11orf42Q8N5U0 333 aa16.66■□□□□ 0.26
USP48-201ENST00000308271 RCC1LQ96I51 464 aaKnown RBP16.66■□□□□ 0.26
USP48-201ENST00000308271 GPHA2Q96T91 129 aa16.66■□□□□ 0.26
USP48-201ENST00000308271 MTCL1Q9Y4B5 1905 aaKnown RBP16.66■□□□□ 0.26
USP48-201ENST00000308271 TEX50A0A1B0GTY4 177 aa16.65■□□□□ 0.26
USP48-201ENST00000308271 SLC23A3Q6PIS1 610 aa16.65■□□□□ 0.26
USP48-201ENST00000308271 CYP2G1PQ6ZSU1 146 aa16.65■□□□□ 0.26
USP48-201ENST00000308271 TUSC5Q8IXB3 177 aa16.65■□□□□ 0.26
USP48-201ENST00000308271 LRRC3CA6NJW4 275 aa16.65■□□□□ 0.26
USP48-201ENST00000308271 SIAH2O43255 324 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms