RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 FAM171A2A8MVW0 826 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 C22orf46C9J442 243 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 E9PQ18 207 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 ARG1P05089 322 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 RBMY1DP0C7P1 496 aaKnown RBP4.62□□□□□ -1.67
SCN1A-201ENST00000303395 RNF224P0DH78 156 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 RBMY1A1P0DJD3 496 aaKnown RBP4.62□□□□□ -1.67
SCN1A-201ENST00000303395 RBMY1CP0DJD4 496 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 TNFAIP6P98066 277 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-201ENST00000303395 PDPNQ86YL7 162 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 KIR3DL3Q8N743 410 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 PGLYRP3Q96LB9 341 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 DDA1Q9BW61 102 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 BOLA1Q9Y3E2 137 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 PSME4Q14997 1843 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 THADAQ6YHU6 1953 aa4.62□□□□□ -1.67
SCN1A-201ENST00000303395 A8MWL6 223 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 EPPINO95925 133 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 FBXO45P0C2W1 286 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 SFTPCP11686 197 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 CCL5P13501 91 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 PNLIPP16233 465 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 GZMHP20718 246 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 RPS4XP62701 263 aaKnown RBP4.61□□□□□ -1.67
SCN1A-201ENST00000303395 ZDHHC23Q8IYP9 409 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF296Q8WUU4 475 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-201ENST00000303395 TM2D1Q9BX74 207 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 C1QTNF6Q9BXI9 259 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 ZBP1Q9H171 429 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 WFDC1Q9HC57 220 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 FGF21Q9NSA1 209 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 LIPGQ9Y5X9 500 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 TAL1P17542 331 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF77Q15935 545 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 FAM71F2Q6NXP2 309 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 SHISA6Q6ZSJ9 500 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 BHLHA9Q7RTU4 235 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 BCORP1Q8N888 145 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 OR4X2Q8NGF9 303 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 HIST1H2BAQ96A08 127 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 SLC25A2Q9BXI2 301 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 TXNRD2Q9NNW7 524 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 PLXNA1Q9UIW2 1896 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 LANCL1O43813 399 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 TRGC2P03986 189 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 CDKN3Q16667 212 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 MDP1Q86V88 176 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 SARAFQ96BY9 339 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 CNRIP1Q96F85 164 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-201ENST00000303395 C3orf85A0A1B0GTC6 90 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 RAMP1O60894 148 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 MALP21145 153 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 SNRPNP63162 240 aaKnown RBP4.61□□□□□ -1.67
SCN1A-201ENST00000303395 EFNB1P98172 346 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 LAMTOR1Q6IAA8 161 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 ANKRD33Q7Z3H0 272 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF761Q86XN6 746 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-201ENST00000303395 RXFP4Q8TDU9 374 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 INSM2Q96T92 566 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-201ENST00000303395 PRDM14Q9GZV8 571 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 MS4A3Q96HJ5 214 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 NPFFR1Q9GZQ6 430 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 J3QR06 171 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 RHOGP84095 191 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 SPANXN1Q5VSR9 72 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 TMEM182Q6ZP80 229 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-201ENST00000303395 POC1AQ8NBT0 407 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 C20orf144Q9BQM9 153 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 SLC25A10Q9UBX3 287 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-201ENST00000303395 LAMTOR2Q9Y2Q5 125 aa4.61□□□□□ -1.67
SCN1A-201ENST00000303395 A0A1W2PPC1 479 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 FAM231BA6NCW3 169 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 TMPRSS11DO60235 418 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ZNF737O75373 536 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 CD160O95971 181 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 PF4P02776 101 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ACAA1P09110 424 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ZFP36L2P47974 494 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 RAE1P78406 368 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 FOXL1Q12952 345 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 C10orf128Q5T292 105 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 WDR25Q64LD2 544 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 HAPLN4Q86UW8 402 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 OR5C1Q8NGR4 320 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ORAOV1Q8WV07 137 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 KISS1RQ969F8 398 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 OR6C1Q96RD1 312 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 QDPRP09417 244 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 LGALS3P17931 250 aaKnown RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 DSCR4P56555 118 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 C1orf61Q13536 156 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 SLC25A34Q6PIV7 304 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 Q6ZPB1 254 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-201ENST00000303395 OR1F12Q8NHA8 337 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 ELSPBP1Q96BH3 223 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 DMRTA2Q96SC8 542 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 SLC46A2Q9BY10 475 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 OR2W1Q9Y3N9 320 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 SHANK3Q9BYB0 1731 aa4.6□□□□□ -1.67
SCN1A-201ENST00000303395 K7ESF4 209 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms