RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FAM71F2Q6NXP2 309 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 SGPP2Q8IWX5 399 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 OR52I1Q8NGK6 324 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 PYDC1Q8WXC3 89 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 NABP2Q9BQ15 211 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 MRPL20Q9BYC9 149 aaKnown RBP11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 TAF9BQ9HBM6 251 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 STUB1Q9UNE7 303 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 PEX16Q9Y5Y5 336 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 BIRC6Q9NR09 4857 aa11.4□□□□□ -0.58
CCDC88B-201ENST00000301897 EPPK1P58107 5090 aaKnown RBP11.4□□□□□ -0.59
CCDC88B-201ENST00000301897 A0A1W2PN81 502 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 A0A1W2PP11 408 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 GPX5O75715 221 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 HSPB1P04792 205 aaKnown RBP11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 LIMS3P0CW19 117 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 LIMS4P0CW20 117 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 IGHV4-30-4P0DP06 118 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 FUT3P21217 361 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 CNTFRP26992 372 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 CHRNA7P36544 502 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 SRSF7Q16629 238 aaKnown RBP eCLIP11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 ECSCRQ19T08 205 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 C19orf54Q5BKX5 351 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 ZNF833PQ6ZTB9 187 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 CDH26Q8IXH8 852 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 ALX4Q9H161 411 aaPredicted RBP11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 EDA2RQ9HAV5 297 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 TPSG1Q9NRR2 321 aa11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 MBNL3Q9NUK0 354 aaKnown RBP11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 NKX1-2Q9UD57 310 aaPredicted RBP11.39□□□□□ -0.59
CCDC88B-201ENST00000301897 STARD9Q9P2P6 4700 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 IGHV4OR15-8A0A075B7B6 117 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 A0A087WW49 117 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 YPEL1O60688 119 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 IGFBP3P17936 291 aaPredicted RBP11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 PPP1CCP36873 323 aaKnown RBP11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 ADARB1P78563 741 aaKnown RBP11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 PLGLAQ15195 96 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 AKIRIN2Q53H80 203 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 XAF1Q6GPH4 301 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 CD200R1LQ6Q8B3 271 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 ANKRD13BQ86YJ7 626 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 ODF3L1Q8IXM7 274 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 CBR4Q8N4T8 237 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 OR2AK2Q8NG84 335 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 GALMQ96C23 342 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 SMIM19Q96E16 107 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 YPEL2Q96QA6 119 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 SPATA25Q9BR10 227 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 SLA2Q9H6Q3 261 aa11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 FGF20Q9NP95 211 aaPredicted RBP11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 GAR1Q9NY12 217 aaKnown RBP11.38□□□□□ -0.59
CCDC88B-201ENST00000301897 H3BNX3 289 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 RRHO14718 337 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 OGG1O15527 345 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 SOX15O60248 233 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 RBBP9O75884 186 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 MAS1P04201 325 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 IFNA6P05013 189 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 FSTP19883 344 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 DCKP27707 260 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 CX3CL1P78423 397 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 NDPQ00604 133 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 GNMTQ14749 295 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 Q499Y3 187 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 ACTBL2Q562R1 376 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 GLIPR1L1Q6UWM5 242 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 JAGN1Q8N5M9 183 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 ABHD5Q8WTS1 349 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 RBMXL1Q96E39 390 aaKnown RBP11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 RITA1Q96K30 269 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 C19orf73Q9NVV2 129 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 NUBP2Q9Y5Y2 271 aa11.37□□□□□ -0.59
CCDC88B-201ENST00000301897 SAA2-SAA4A0A096LPE2 208 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 TRBV5-5A0A0J9YX44 114 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 IRGMA1A4Y4 181 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 OR5H14A6NHG9 310 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 PDCD6O75340 191 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 JTBO76095 146 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 IGLV1-51P01701 117 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 SAA2P0DJI9 122 aaPredicted RBP11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 MGMTP16455 207 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 ZP3P21754 424 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 MC5RP33032 325 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 YIF1BQ5BJH7 314 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 AWAT2Q6E213 333 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 ZFP1Q6P2D0 407 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 Q8N1Y9 231 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 OR52L2PQ8NGH6 319 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 IL17DQ8TAD2 202 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 MUL1Q969V5 352 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 Q96M66 194 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 RDH12Q96NR8 316 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 RNF5Q99942 180 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 SELENOIQ9C0D9 397 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 BABAM2Q9NXR7 383 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 PIPOXQ9P0Z9 390 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 ABRACLQ9P1F3 81 aa11.36□□□□□ -0.59
CCDC88B-201ENST00000301897 STEAP1Q9UHE8 339 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms