RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TWIST1Q15672 202 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 MESTQ5EB52 335 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 WDFY1Q8IWB7 410 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 ZNF441Q8N8Z8 693 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 FGF13Q92913 245 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 ST6GALNAC6Q969X2 333 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 ZNF707Q96C28 371 aaPredicted RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 DPH3Q96FX2 82 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 TAAR6Q96RI8 345 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 GGACTQ9BVM4 153 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 TM2D1Q9BX74 207 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 GPR84Q9NQS5 396 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 ELOVL5Q9NYP7 299 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 LRP12Q9Y561 859 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 MYO16Q9Y6X6 1858 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 TNFSF11O14788 317 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 FAM157CP0CG43 387 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 GLULP15104 373 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 ORM2P19652 201 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 FAM3BP58499 235 aaPredicted RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 RNPS1Q15287 305 aaKnown RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 MEIG1Q5JSS6 88 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 C14orf144Q96I85 54 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 PMCHL2Q9BQD1 86 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 SSBP4Q9BWG4 385 aaPredicted RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 SMOC1Q9H4F8 434 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 IL36GQ9NZH8 169 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 DTX4Q9Y2E6 619 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 TRBV24-1A0A075B6N3 115 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 FAM90A26D6RGX4 464 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 SP1P08047 785 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 COL8A1P27658 744 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 SNAI3Q3KNW1 292 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 RBPMS2Q6ZRY4 209 aaKnown RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 LINC00596Q86U02 117 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 C12orf76Q8N812 135 aaPredicted RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 GPBAR1Q8TDU6 330 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 COPS9Q8WXC6 57 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 TSACCQ96A04 125 aaPredicted RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 SLAMF6Q96DU3 332 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 NLRC5Q86WI3 1866 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 C11orf94C9JXX5 98 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 MS4A18H0YCH9 400 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 M0R296 226 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 PITX3O75364 302 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 VSIG8P0DPA2 414 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 MUC1P15941 1255 aaPredicted RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 CA6P23280 308 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 HIST1H4AP62805 103 aaKnown RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 MS4A18Q3C1V0 323 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 DMRTC1Q5HYR2 192 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 TMEM211Q6ICI0 200 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 C1orf122Q6ZSJ8 110 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 OR1B1Q8NGR6 318 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 RDH5Q92781 318 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 C2orf88Q9BSF0 95 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 PLSCR2Q9NRY7 297 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 FBXL17Q9UF56 701 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 A0A1W2PRD5 423 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 A0A1W2PRF3 423 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 A0A1W2PRM7 423 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 M0QZ24 198 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 C1QCP02747 245 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 CEACAM1P13688 526 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 SLC38A11Q08AI6 406 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 SELENOHQ8IZQ5 122 aaKnown RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 C16orf52Q8NHV5 167 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 IMMP2LQ96T52 175 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 GFI1Q99684 422 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 HSD17B10Q99714 261 aaKnown RBP5.61□□□□□ -1.51
VPS35-201ENST00000299138 MANBALQ9NQG1 85 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 VSIG4Q9Y279 399 aa5.61□□□□□ -1.51
VPS35-201ENST00000299138 C19orf67A6NJJ6 358 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 IL9P15248 144 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 VDAC1P21796 283 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 PMCHL1Q16048 86 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 PLPPR5Q32ZL2 321 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 RNFT1Q5M7Z0 435 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 C8orf44Q96CB5 159 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 CDX2Q99626 313 aaPredicted RBP5.6□□□□□ -1.51
VPS35-201ENST00000299138 TMEM204Q9BSN7 226 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 WNT5BQ9H1J7 359 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 MOB4Q9Y3A3 225 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 ADAM20O43506 726 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 VENTXO95231 258 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 MRGPRDQ8TDS7 321 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 MUCL1Q96DR8 90 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 PLPPR2Q96GM1 343 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 POM121L2Q96KW2 1035 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 STRADBQ9C0K7 418 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 WNT16Q9UBV4 365 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 MEX3AA1L020 520 aaKnown RBP5.6□□□□□ -1.51
VPS35-201ENST00000299138 LINC01387J3KSC0 135 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 PRKNO60260 465 aaPredicted RBP5.6□□□□□ -1.51
VPS35-201ENST00000299138 SRSF10O75494 262 aaKnown RBP5.6□□□□□ -1.51
VPS35-201ENST00000299138 DYNLT3P51808 116 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 ERV3-1Q14264 604 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 Q6ZS49 121 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 ZNF714Q96N38 554 aa5.6□□□□□ -1.51
VPS35-201ENST00000299138 WFDC6Q9BQY6 131 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms