RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PLSCR4Q9NRQ2 329 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 KPTNQ9Y664 436 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 RP1L1Q8IWN7 2480 aaPredicted RBP16.87■□□□□ 0.29
VPS53-201ENST00000291074 ACP7Q6ZNF0 438 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 COQ2Q96H96 371 aa16.87■□□□□ 0.29
VPS53-201ENST00000291074 IGHV2OR16-5A0A0B4J2B6 119 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 OR2B11Q5JQS5 317 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 C5orf30Q96GV9 206 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 RARRES2Q99969 163 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 C20orf24Q9BUV8 137 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 ZNF71Q9NQZ8 489 aaPredicted RBP16.86■□□□□ 0.29
VPS53-201ENST00000291074 LIN7CQ9NUP9 197 aaKnown RBP16.86■□□□□ 0.29
VPS53-201ENST00000291074 C1QTNF9BB2RNN3 333 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 WNT2P09544 360 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 MRGPRDQ8TDS7 321 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 KCNIP1Q9NZI2 227 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 PROCRQ9UNN8 238 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 PRELID3BQ9Y3B1 194 aa16.86■□□□□ 0.29
VPS53-201ENST00000291074 TXNL1O43396 289 aa16.85■□□□□ 0.29
VPS53-201ENST00000291074 GABRA2P47869 451 aa16.85■□□□□ 0.29
VPS53-201ENST00000291074 ZNF808Q8N4W9 903 aaPredicted RBP16.85■□□□□ 0.29
VPS53-201ENST00000291074 LSM10Q969L4 123 aaKnown RBP16.85■□□□□ 0.29
VPS53-201ENST00000291074 ATP5SQ99766 215 aa16.85■□□□□ 0.29
VPS53-201ENST00000291074 CGAP01215 116 aa16.85■□□□□ 0.29
VPS53-201ENST00000291074 IGLV1-44P01699 117 aa16.85■□□□□ 0.29
VPS53-201ENST00000291074 SLC25A6P12236 298 aa16.85■□□□□ 0.29
VPS53-201ENST00000291074 RPL23AP62750 156 aaKnown RBP16.85■□□□□ 0.29
VPS53-201ENST00000291074 SPSB3Q6PJ21 355 aa16.85■□□□□ 0.29
VPS53-201ENST00000291074 STX12Q86Y82 276 aa16.85■□□□□ 0.29
VPS53-201ENST00000291074 RXFP4Q8TDU9 374 aa16.85■□□□□ 0.29
VPS53-201ENST00000291074 OR2D2Q9H210 308 aa16.85■□□□□ 0.29
VPS53-201ENST00000291074 ZFHX2Q9C0A1 2572 aaPredicted RBP16.85■□□□□ 0.29
VPS53-201ENST00000291074 HBZP02008 142 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 KITLGP21583 273 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 IL2RGP31785 369 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 BHLHA15Q7RTS1 189 aaPredicted RBP16.84■□□□□ 0.29
VPS53-201ENST00000291074 RPRMLQ8N4K4 120 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 C12orf57Q99622 126 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 MLXQ9UH92 298 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 AHRRA9YTQ3 701 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 SYNGR2O43760 224 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 RAMP3O60896 148 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 ACAA1P09110 424 aaPredicted RBP16.84■□□□□ 0.29
VPS53-201ENST00000291074 OR13C7P0DN81 318 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 GCH1P30793 250 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 MSMPQ1L6U9 139 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 ZNF718Q3SXZ3 478 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 AWAT1Q58HT5 328 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 GALMQ96C23 342 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 RAB40CQ96S21 281 aa16.84■□□□□ 0.29
VPS53-201ENST00000291074 CEACAM4O75871 244 aa16.83■□□□□ 0.29
VPS53-201ENST00000291074 METTL15P1P0C7V9 234 aa16.83■□□□□ 0.29
VPS53-201ENST00000291074 SSTR5P35346 364 aa16.83■□□□□ 0.29
VPS53-201ENST00000291074 GLIPR1P48060 266 aa16.83■□□□□ 0.29
VPS53-201ENST00000291074 SULT1A1P50225 295 aa16.83■□□□□ 0.29
VPS53-201ENST00000291074 FLI1Q01543 452 aaPredicted RBP16.83■□□□□ 0.29
VPS53-201ENST00000291074 COL10A1Q03692 680 aa16.83■□□□□ 0.29
VPS53-201ENST00000291074 ARL16Q0P5N6 197 aa16.83■□□□□ 0.29
VPS53-201ENST00000291074 RPS10P5Q9NQ39 176 aa16.83■□□□□ 0.29
VPS53-201ENST00000291074 CEP250Q9BV73 2442 aa16.83■□□□□ 0.29
VPS53-201ENST00000291074 DOCK11Q5JSL3 2073 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 UMAD1C9J7I0 102 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 SNRNP70P08621 437 aaKnown RBP16.83■□□□□ 0.28
VPS53-201ENST00000291074 RPL30P62888 115 aaKnown RBP16.83■□□□□ 0.28
VPS53-201ENST00000291074 ZADH2Q8N4Q0 377 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 CLCC1Q96S66 551 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 MAP1BP46821 2468 aaKnown RBP16.83■□□□□ 0.28
VPS53-201ENST00000291074 IGHV3-43A0A0B4J1X8 118 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 OR5H1A6NKK0 313 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 ZNF891A8MT65 544 aaPredicted RBP16.83■□□□□ 0.28
VPS53-201ENST00000291074 IGHV3-43DP0DP04 118 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 SLC35E4Q6ICL7 350 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 LRP11Q86VZ4 500 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 GNPNAT1Q96EK6 184 aaPredicted RBP16.83■□□□□ 0.28
VPS53-201ENST00000291074 DCTN5Q9BTE1 182 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 PBDC1Q9BVG4 233 aa16.83■□□□□ 0.28
VPS53-201ENST00000291074 ICE1Q9Y2F5 2266 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 DAOP14920 347 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 BTNL3Q6UXE8 466 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 THNSL2Q86YJ6 484 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 ZNF645Q8N7E2 425 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 PSENENQ9NZ42 101 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 WSB1Q9Y6I7 421 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 OOEPA6NGQ2 149 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 M0R036 132 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 ZNF83P51522 516 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 HAPLN4Q86UW8 402 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 FGFRL1Q8N441 504 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 LFNGQ8NES3 379 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 OR2Z1Q8NG97 314 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 OR13A1Q8NGR1 328 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 RFESDQ8TAC1 157 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 CD300LFQ8TDQ1 290 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 LRRC29Q8WV35 223 aa16.82■□□□□ 0.28
VPS53-201ENST00000291074 CRYBA1P05813 215 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 TAS2R30P59541 319 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 ZNF816Q0VGE8 651 aaPredicted RBP16.81■□□□□ 0.28
VPS53-201ENST00000291074 KRBOX4Q5JUW0 171 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 SLC25A24Q6NUK1 477 aa16.81■□□□□ 0.28
VPS53-201ENST00000291074 RSG1Q9BU20 258 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms