RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 NANOS1Q8WY41 292 aaKnown RBP14.06□□□□□ -0.16
VPS54-201ENST00000272322 GTF3AQ92664 365 aaKnown RBP14.06□□□□□ -0.16
VPS54-201ENST00000272322 SLC25A31Q9H0C2 315 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 MPC1Q9Y5U8 109 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 J3QT63 122 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 RPS10P46783 165 aaKnown RBP14.05□□□□□ -0.16
VPS54-201ENST00000272322 UCP2P55851 309 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 RAB11AP62491 216 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 RPL23AP62750 156 aaKnown RBP14.05□□□□□ -0.16
VPS54-201ENST00000272322 TESK1Q15569 626 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 FAM201AQ5SY85 155 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 C10orf91Q5T1B1 145 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 OR5T1Q8NG75 326 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 SLC35B3Q9H1N7 401 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 OPN3Q9H1Y3 402 aaPredicted RBP14.05□□□□□ -0.16
VPS54-201ENST00000272322 PLSCR2Q9NRY7 297 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 PSENENQ9NZ42 101 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 TGFBR3Q03167 851 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 ZNF665Q9H7R5 613 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 ZNF318Q5VUA4 2279 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 OR5H1A6NKK0 313 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 K7N7A8 449 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 GLIPR1P48060 266 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 PDZD11Q5EBL8 140 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 PBDC1Q9BVG4 233 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 CLN8Q9UBY8 286 aa14.05□□□□□ -0.16
VPS54-201ENST00000272322 SPTBN1Q01082 2364 aaKnown RBP14.04□□□□□ -0.16
VPS54-201ENST00000272322 IGHV3OR15-7A0A075B7D8 119 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 RBFOX3A6NFN3 312 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 OR5B21A6NL26 309 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 C1orf196B1AJZ1 125 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 IGKV1-5P01602 117 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 TNFSF10P50591 281 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 ID3Q02535 119 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 DRAM1Q8N682 238 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 TMEM178AQ8NBL3 297 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 SH3BGRL2Q9UJC5 107 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 IGF2RP11717 2491 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 UBE2L5PA0A1B0GUS4 154 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 SRPXP78539 464 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 MRPL49Q13405 166 aaKnown RBP14.04□□□□□ -0.16
VPS54-201ENST00000272322 HABP2Q14520 560 aaPredicted RBP14.04□□□□□ -0.16
VPS54-201ENST00000272322 Q6P435 159 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 C9orf106Q8NAJ2 232 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 LEAP2Q969E1 77 aa14.04□□□□□ -0.16
VPS54-201ENST00000272322 ZNF98A6NK75 572 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 NUDT19A8MXV4 375 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 HAND1O96004 215 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 IFNA5P01569 189 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 COL8A2P25067 703 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 TAGLN2P37802 199 aaKnown RBP14.03□□□□□ -0.16
VPS54-201ENST00000272322 ZNF674Q2M3X9 581 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 NCMAPQ5T1S8 102 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 Q6ZR03 302 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 SCGB1C1Q8TD33 95 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 RPRMQ9NS64 109 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 ST8SIA5O15466 376 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 HEXAP06865 529 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 H1FOOQ8IZA3 346 aaPredicted RBP14.03□□□□□ -0.16
VPS54-201ENST00000272322 RPRMLQ8N4K4 120 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 BIN3Q9NQY0 253 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 SH2D1BO14796 132 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 RAB5BP61020 215 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 UBE2KP61086 200 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 RPL30P62888 115 aaKnown RBP14.03□□□□□ -0.16
VPS54-201ENST00000272322 FIP1L1Q6UN15 594 aaKnown RBP14.03□□□□□ -0.16
VPS54-201ENST00000272322 FAM185AQ8N0U4 392 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 VKORC1L1Q8N0U8 176 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 FGFRL1Q8N441 504 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 DEFB108BQ8NET1 73 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 NANPQ8TBE9 248 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 ZDHHC16Q969W1 377 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 SCRT1Q9BWW7 348 aa14.03□□□□□ -0.16
VPS54-201ENST00000272322 H0Y980 276 aa14.02□□□□□ -0.16
VPS54-201ENST00000272322 MLNRO43193 412 aa14.02□□□□□ -0.16
VPS54-201ENST00000272322 SYNGR2O43760 224 aa14.02□□□□□ -0.16
VPS54-201ENST00000272322 IL24Q13007 206 aa14.02□□□□□ -0.16
VPS54-201ENST00000272322 C4orf17Q53FE4 359 aa14.02□□□□□ -0.16
VPS54-201ENST00000272322 ZNF610Q8N9Z0 462 aa14.02□□□□□ -0.16
VPS54-201ENST00000272322 TCTEX1D2Q8WW35 142 aa14.02□□□□□ -0.16
VPS54-201ENST00000272322 RNF122Q9H9V4 155 aa14.02□□□□□ -0.16
VPS54-201ENST00000272322 COL12A1Q99715 3063 aa14.02□□□□□ -0.16
VPS54-201ENST00000272322 OR2C1O95371 312 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 CTXN2P0C2S0 81 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 EIF2S3LQ2VIR3 472 aaKnown RBP14.02□□□□□ -0.17
VPS54-201ENST00000272322 SPSB3Q6PJ21 355 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 LRP11Q86VZ4 500 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 OR2Z1Q8NG97 314 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 SVEP1Q4LDE5 3571 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 H3BQ15 152 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 IGLV2-14P01704 120 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 FABP9Q0Z7S8 132 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 ZNF585BQ52M93 769 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 TMPRSS5Q9H3S3 457 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 PSG11Q9UQ72 335 aa14.02□□□□□ -0.17
VPS54-201ENST00000272322 YLPM1P49750 1951 aaKnown RBP14.02□□□□□ -0.17
VPS54-201ENST00000272322 C12orf77C9JDV5 145 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 PTBP3O95758 552 aaKnown RBP14.01□□□□□ -0.17
VPS54-201ENST00000272322 ZNF83P51522 516 aa14.01□□□□□ -0.17
VPS54-201ENST00000272322 NRN1LQ496H8 165 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms