RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 HEXA-AS1Q9H8Q6 139 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 LAMP3Q9UQV4 416 aa13.7□□□□□ -0.22
USP4-201ENST00000265560 PSMB6P28072 239 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 P2RX3P56373 397 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 DRAM1Q8N682 238 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 FAM222BQ8WU58 562 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 ZNRD1Q9P1U0 126 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 PPIAL4EA0A075B759 164 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 PPIAL4DF5H284 164 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 C15orf65H3BRN8 121 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 PPIAL4FP0DN26 164 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 OPCMLQ14982 345 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 SWI5Q1ZZU3 235 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 FAM209AQ5JX71 171 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 AVPI1Q5T686 147 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 CLEC9AQ6UXN8 241 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 Q8TCH9 128 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 GALNT14Q96FL9 552 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 C5orf30Q96GV9 206 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 RNF126Q9BV68 326 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 FAM234AQ9H0X4 552 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 ZNF665Q9H7R5 613 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 LSM5Q9Y4Y9 91 aaKnown RBP13.69□□□□□ -0.22
USP4-201ENST00000265560 PPIAL4AQ9Y536 164 aa13.69□□□□□ -0.22
USP4-201ENST00000265560 IGHV1-69-2A0A0G2JMI3 117 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 ADAM20O43506 726 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 MMP23AO75900 390 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 EPHA1P21709 976 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 LPCAT3Q6P1A2 487 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 ZNF788Q6ZQV5 615 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 TMUB2Q71RG4 321 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 H1FXQ92522 213 aaKnown RBP13.68□□□□□ -0.22
USP4-201ENST00000265560 RRNAD1Q96FB5 475 aaKnown RBP13.68□□□□□ -0.22
USP4-201ENST00000265560 ZNF695Q8IW36 515 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 THAP6Q8TBB0 222 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 DCUN1D4Q92564 292 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 TMEM222Q9H0R3 208 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 SPINT2O43291 252 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 IFNA21P01568 189 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 CD55P08174 381 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 ZNF561Q8N587 486 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 PPP1R35Q8TAP8 253 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 C2orf50Q96LR7 162 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 NARFLQ9H6Q4 476 aa13.68□□□□□ -0.22
USP4-201ENST00000265560 NDUFS7O75251 213 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 ZNF134P52741 427 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 DLX1P56177 255 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 SDSLQ96GA7 329 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 DIRC2Q96SL1 478 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 TRAF4Q9BUZ4 470 aaPredicted RBP13.67□□□□□ -0.22
USP4-201ENST00000265560 PTPN13Q12923 2485 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 MSGN1A6NI15 193 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 ADH4P08319 380 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 F2RP25116 425 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 C6orf183Q5T699 404 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 TCF23Q7RTU1 214 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 LGI3Q8N145 548 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 ERGIC1Q969X5 290 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 C19orf12Q9NSK7 152 aa13.67□□□□□ -0.22
USP4-201ENST00000265560 A0A0B4J2A0 478 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 SLC31A2O15432 143 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 MUC1P15941 1255 aaPredicted RBP13.66□□□□□ -0.22
USP4-201ENST00000265560 RPL30P62888 115 aaKnown RBP13.66□□□□□ -0.22
USP4-201ENST00000265560 OR1S1Q8NH92 325 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 C18orf12Q96KH6 178 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 SUCNR1Q9BXA5 334 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 SLC25A10Q9UBX3 287 aaPredicted RBP13.66□□□□□ -0.22
USP4-201ENST00000265560 SHPKQ9UHJ6 478 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 TRAV38-1A0A0B4J264 116 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 LGALS8O00214 317 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 RAMP3O60896 148 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 SPDEFO95238 335 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 CCL3L1P16619 93 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 CDKN1AP38936 164 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 EFNB3Q15768 340 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 SELENOHQ8IZQ5 122 aaKnown RBP13.66□□□□□ -0.22
USP4-201ENST00000265560 LURAP1Q96LR2 239 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 NMES1Q9C002 83 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 MAGT1Q9H0U3 335 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 CALYQ9NYX4 217 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 CTSZQ9UBR2 303 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 A0A0G2JRQ6 117 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 RNF222A6NCQ9 220 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 S100A11P31949 105 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 GNG10P50151 68 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 HFEQ30201 348 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 Q3ZCU0 254 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 BVESQ8NE79 360 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 GON7Q9BXV9 100 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 SLA2Q9H6Q3 261 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 UBTD1Q9HAC8 227 aa13.66□□□□□ -0.22
USP4-201ENST00000265560 USP9YO00507 2555 aaPredicted RBP13.65□□□□□ -0.22
USP4-201ENST00000265560 SRSF4Q08170 494 aaKnown RBP13.65□□□□□ -0.22
USP4-201ENST00000265560 ZNF273Q14593 569 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 C17orf58Q2M2W7 97 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 TEX36Q5VZQ5 186 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 HMSDA8MTL9 139 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 SIGLEC5O15389 551 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 SERPINE2P07093 398 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 GZMHP20718 246 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms