RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 NINJ1Q92982 152 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 FAM234AQ9H0X4 552 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 RBM7Q9Y580 266 aaKnown RBP12.4□□□□□ -0.42
CCDC47-201ENST00000225726 RAI1Q7Z5J4 1906 aaPredicted RBP12.4□□□□□ -0.42
CCDC47-201ENST00000225726 A0A0D9SG52 128 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 HTD2P86397 168 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 ZNF345Q14585 488 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 TEX261Q6UWH6 196 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 ZNF788Q6ZQV5 615 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 LYZL2Q7Z4W2 148 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 OR52L2PQ8NGH6 319 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 ARL6Q9H0F7 186 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 DCAF16Q9NXF7 216 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 U3KQ87 197 aa12.4□□□□□ -0.42
CCDC47-201ENST00000225726 OR2F2O95006 317 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 GYPAP02724 150 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 PET100P0DJ07 73 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 LYL1P12980 280 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 GNLYP22749 145 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 UCP1P25874 307 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 SSTR5P35346 364 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 OR2F1Q13607 317 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 SWI5Q1ZZU3 235 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 MEX3BQ6ZN04 569 aaKnown RBP12.39□□□□□ -0.43
CCDC47-201ENST00000225726 DEFB108BQ8NET1 73 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 C14orf79Q96F83 325 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 PARP12Q9H0J9 701 aaKnown RBP12.39□□□□□ -0.43
CCDC47-201ENST00000225726 GSKIPQ9P0R6 139 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 KCNS2Q9ULS6 477 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 TMED3Q9Y3Q3 217 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 HCFC1P51610 2035 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 NKX6-3A6NJ46 265 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 TMEM178BH3BS89 294 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 IGLV2-14P01704 120 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 AGAP20933 346 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 NUP62P37198 522 aaPredicted RBP12.39□□□□□ -0.43
CCDC47-201ENST00000225726 PRSS54Q6PEW0 395 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 DCTN5Q9BTE1 182 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 RNF126Q9BV68 326 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 OR6C3Q9NZP0 311 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 ITPR1Q14643 2758 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 TANC2Q9HCD6 1990 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 TRAV38-1A0A0B4J264 116 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 DUXBA0A1W2PPF3 345 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 TNFSF12O43508 249 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 OR8U9P0C7N5 309 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 F2RP25116 425 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 UQCRFS1P47985 274 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 TMEM268Q5VZI3 342 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 ATRAIDQ6UW56 229 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 OR8U1Q8NH10 309 aa12.39□□□□□ -0.43
CCDC47-201ENST00000225726 CLDN14O95500 239 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 EDDM3BP56851 147 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 GNMTQ14749 295 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 MSMO1Q15800 293 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 ACOT7LQ6ZUV0 252 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 ZNF695Q8IW36 515 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 SELENOHQ8IZQ5 122 aaKnown RBP12.38□□□□□ -0.43
CCDC47-201ENST00000225726 KCNRGQ8N5I3 272 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 SLC35G3Q8N808 338 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 IL22RA2Q969J5 263 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 CCL13Q99616 98 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 TMEM106BQ9NUM4 274 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 CACNA1DQ01668 2161 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 CDS2O95674 445 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 SELLP14151 372 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 RAB32Q13637 225 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 MUC15Q8N387 334 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 ZBTB34Q8NCN2 500 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 GPHA2Q96T91 129 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 RNF222A6NCQ9 220 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 H0YIZ8 118 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 RP2O75695 350 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 ZNF645Q8N7E2 425 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 INO80EQ8NBZ0 244 aaPredicted RBP12.38□□□□□ -0.43
CCDC47-201ENST00000225726 DCUN1D4Q92564 292 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 RAB9BQ9NP90 201 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 OR2S2Q9NQN1 319 aa12.38□□□□□ -0.43
CCDC47-201ENST00000225726 PPIAL4EA0A075B759 164 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 PIGBOS1A0A0B4J2F0 54 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 PPIAL4DF5H284 164 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 PPIAL4FP0DN26 164 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 PPP1CCP36873 323 aaKnown RBP12.37□□□□□ -0.43
CCDC47-201ENST00000225726 PPIAL4AQ9Y536 164 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 DSCAMO60469 2012 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 A0A1B0GW55 424 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 CFDP00746 253 aaPredicted RBP12.37□□□□□ -0.43
CCDC47-201ENST00000225726 IFNA7P01567 189 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 DUX4L2P0CJ85 424 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 DUX4L3P0CJ86 424 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 DUX4L4P0CJ87 422 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 DUX4L5P0CJ88 424 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 DUX4L6P0CJ89 424 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 DUX4L7P0CJ90 424 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 DUX4L9Q6RFH8 374 aaPredicted RBP12.37□□□□□ -0.43
CCDC47-201ENST00000225726 STPG2Q8N412 459 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 DRAM1Q8N682 238 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 RFESDQ8TAC1 157 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 FAM216AQ8WUB2 273 aa12.37□□□□□ -0.43
CCDC47-201ENST00000225726 ITLN2Q8WWU7 325 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms