RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 PPP1R32Q7Z5V6 425 aa11.9□□□□□ -0.5
USH1C-201ENST00000005226 MBD3L1Q8WWY6 194 aa11.9□□□□□ -0.5
USH1C-201ENST00000005226 LHX4Q969G2 390 aa11.9□□□□□ -0.5
USH1C-201ENST00000005226 GTF3C1Q12789 2109 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 ELOA3CA0A087WX78 387 aaPredicted RBP11.89□□□□□ -0.51
USH1C-201ENST00000005226 B4DEV8 164 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 CD81P60033 236 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 OR8G1Q15617 311 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 LRRC75BQ2VPJ9 315 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 FAM58AQ8N1B3 248 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 RPP25LQ8N5L8 163 aaKnown RBP11.89□□□□□ -0.51
USH1C-201ENST00000005226 OR13D1Q8NGV5 346 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 IL22RA2Q969J5 263 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 SMIM7Q9BQ49 75 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 LAMP3Q9UQV4 416 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 DOCK10Q96BY6 2186 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 A0A087X0M5 115 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 A0A1B0GX30 115 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 SELEP16581 610 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 DDTP30046 118 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 GFRA1P56159 465 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 SLC25A22Q9H936 323 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 VAX2Q9UIW0 290 aa11.89□□□□□ -0.51
USH1C-201ENST00000005226 SMCO3A2RU48 225 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 FAM166BA8MTA8 275 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 IFNL4K9M1U5 179 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 DEGS1O15121 323 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 BMP5P22003 454 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 S100GP29377 79 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 P2RY6Q15077 328 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 RNPS1Q15287 305 aaKnown RBP11.88□□□□□ -0.51
USH1C-201ENST00000005226 OR10G4Q8NGN3 311 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 OR5P3Q8WZ94 311 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 SLC39A9Q9NUM3 307 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 NDUFB7P17568 137 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 SRSF7Q16629 238 aaKnown RBP eCLIP11.88□□□□□ -0.51
USH1C-201ENST00000005226 SPINK9Q5DT21 86 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 SSX9Q7RTT3 188 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 APOBEC3DQ96AK3 386 aaPredicted RBP11.88□□□□□ -0.51
USH1C-201ENST00000005226 WFIKKN1Q96NZ8 548 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 WDR61Q9GZS3 305 aaKnown RBP11.88□□□□□ -0.51
USH1C-201ENST00000005226 AURKAIP1Q9NWT8 199 aaPredicted RBP11.88□□□□□ -0.51
USH1C-201ENST00000005226 ACSM6Q6P461 480 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 SAXO1Q8IYX7 474 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 OR10A7Q8NGE5 316 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 OR5A2Q8NGI9 324 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 HLA-CQ95604 372 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 PCGF1Q9BSM1 259 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 PRSS50Q9UI38 385 aa11.88□□□□□ -0.51
USH1C-201ENST00000005226 USF3Q68DE3 2245 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 CLDN1O95832 211 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 WNT5AP41221 380 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 PMP22Q01453 160 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 SLC38A11Q08AI6 406 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 PNRC1Q12796 327 aaPredicted RBP11.87□□□□□ -0.51
USH1C-201ENST00000005226 TMEM41BQ5BJD5 291 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 NCR3LG1Q68D85 454 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 TCEAL6Q6IPX3 200 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 MRGPRGQ86SM5 289 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 TMEM37Q8WXS4 190 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 TAF15Q92804 592 aaKnown RBP eCLIP11.87□□□□□ -0.51
USH1C-201ENST00000005226 CDH20Q9HBT6 801 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 TRAPPC2LQ9UL33 140 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 TRBV24-1A0A075B6N3 115 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 RAMP3O60896 148 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 AMBPP02760 352 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 APLNRP35414 380 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 CEACAM6P40199 344 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 CYB561P49447 251 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 CEBPDP49716 269 aaPredicted RBP11.87□□□□□ -0.51
USH1C-201ENST00000005226 LINC00205P59089 165 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.87□□□□□ -0.51
USH1C-201ENST00000005226 POM121L2Q96KW2 1035 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 GPR87Q9BY21 358 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 HIPK2Q9H2X6 1198 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 CLN8Q9UBY8 286 aa11.87□□□□□ -0.51
USH1C-201ENST00000005226 COL6A3P12111 3177 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 ZNF705GA8MUZ8 300 aaPredicted RBP11.86□□□□□ -0.51
USH1C-201ENST00000005226 KRASP01116 189 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 OPN1MWP04001 364 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 TFF1P04155 84 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 PFN1P07737 140 aaKnown RBP11.86□□□□□ -0.51
USH1C-201ENST00000005226 SNRPCP09234 159 aaKnown RBP11.86□□□□□ -0.51
USH1C-201ENST00000005226 OPN1MW2P0DN77 364 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 OPN1MW3P0DN78 364 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 PKIAP61925 76 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 TMEM241Q24JQ0 296 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 FGFRL1Q8N441 504 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 ZNF808Q8N4W9 903 aaPredicted RBP11.86□□□□□ -0.51
USH1C-201ENST00000005226 MAFAQ8NHW3 353 aaPredicted RBP11.86□□□□□ -0.51
USH1C-201ENST00000005226 C12orf49Q9H741 205 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 A0A1W2PPQ1 181 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 ANKRD30BLA7E2S9 258 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 EGR1P18146 543 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 RPL23P62829 140 aaKnown RBP11.86□□□□□ -0.51
USH1C-201ENST00000005226 HBG1P69891 147 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 HBG2P69892 147 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 ZXDAP98168 799 aa11.86□□□□□ -0.51
USH1C-201ENST00000005226 NUFIP2Q7Z417 695 aaKnown RBP11.86□□□□□ -0.51
USH1C-201ENST00000005226 REC114Q7Z4M0 266 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms