RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SMIM13P0DJ93 91 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF43P17038 809 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2BOP23527 126 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2BBP33778 126 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2BDP58876 126 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2BCP62807 126 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST2H2BEQ16778 126 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 VMA21Q3ZAQ7 101 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2BHQ93079 126 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CSF3RQ99062 836 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2BNQ99877 126 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2BMQ99879 126 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SLC17A9Q9BYT1 436 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 PARLQ9H300 379 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SLC25A10Q9UBX3 287 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 LOXL2Q9Y4K0 774 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 KNCNA6PVL3 124 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 GAPDHSO14556 408 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 WNT3P56703 355 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CGB2Q6NT52 195 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 C11orf87Q6NUJ2 197 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SHC4Q6S5L8 630 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 C6orf201Q7Z4U5 140 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 ADAT3Q96EY9 351 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SLC25A21Q9BQT8 299 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 PELI2Q9HAT8 420 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 KLF12Q9Y4X4 402 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 TEX22C9J3V5 150 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SDCBPO00560 298 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SPINT2O43291 252 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 DHHO43323 396 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 OPN1SWP03999 348 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 GP2P55259 537 aaKnown RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 RAB6CQ53S08 254 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 FBXW12Q6X9E4 464 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 LIMS2Q7Z4I7 341 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 MBD3L2Q8NHZ7 208 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM70Q9BUB7 260 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SYCP2Q9BX26 1530 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 ZC3H13Q5T200 1668 aaKnown RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 A0A087X0K7 114 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 MUC21A0A0G2JKD1 596 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 MUC21A0A140T8X8 626 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 FAM231BA6NCW3 169 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 ASPDHA6ND91 283 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 K7EP34 96 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 HBZP02008 142 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 P2RY2P41231 377 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 SHHQ15465 462 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 MUC21Q5SSG8 566 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 OR13A1Q8NGR1 328 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 SSMEM1Q8WWF3 244 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 A0A1W2PNR3 127 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 GSG1Q2KHT4 349 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 PAQR9Q6ZVX9 377 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 ANKRD33Q7Z3H0 272 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 H1FOOQ8IZA3 346 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-221ENST00000641996 OSR2Q8N2R0 312 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 PIGCQ92535 297 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 COLCA2A8K830 154 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 COL8A1P27658 744 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 C4orf26Q17RF5 130 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 APOOLQ6UXV4 268 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 DNAJC27Q9NZQ0 273 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 FER1L4A9Z1Z3 1794 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 FASNP49327 2511 aaKnown RBP3.09□□□□□ -1.91
SCN1A-221ENST00000641996 RBFOX3A6NFN3 312 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 LAMTOR5O43504 91 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 RAMP2O60895 175 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 UBL3O95164 117 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 ATP6V0CP27449 155 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 CLDN2P57739 230 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 CTBSQ01459 385 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 SUMF1Q8NBK3 374 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 OR4K1Q8NGD4 311 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 FXYD5Q96DB9 178 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 PARP11Q9NR21 331 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 NTMQ9P121 344 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 NBR2O15453 112 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 AMY2AP04746 511 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 NSDHLQ15738 373 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 ABCA11PQ4W5N1 156 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 TCF23Q7RTU1 214 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 RPP25Q9BUL9 199 aaKnown RBP3.09□□□□□ -1.91
SCN1A-221ENST00000641996 ICAM5Q9UMF0 924 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 PAGE4O60829 102 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 PMS2P2O95744 297 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 FAM106CPP0CH98 169 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 GABRG2P18507 467 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 CDKN2BP42772 138 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 NDUFV3P56181 108 aaKnown RBP3.09□□□□□ -1.91
SCN1A-221ENST00000641996 TAS2R20P59543 309 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 UBE2NP61088 152 aaKnown RBP3.09□□□□□ -1.91
SCN1A-221ENST00000641996 FAM106AQ4KMX7 169 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 APOBEC3DQ96AK3 386 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-221ENST00000641996 RASL11BQ9BPW5 248 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 ISG20L2Q9H9L3 353 aaKnown RBP3.09□□□□□ -1.91
SCN1A-221ENST00000641996 SLAMF8Q9P0V8 285 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 BICRAQ9NZM4 1560 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms