RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 A0A1W2PPQ1 181 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ETHE1O95571 254 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 REG1BP48304 166 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 OR10Z1Q8NGY1 313 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 SYT11Q9BT88 431 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 EMCNQ9ULC0 261 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 SCN5AQ14524 2016 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 PLXND1Q9Y4D7 1925 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 LIPT2A6NK58 231 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 H3BMH7 237 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 NPPCP23582 126 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 CTGFP29279 349 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 SELENOPP49908 381 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 FAM159AQ6UWV7 190 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 Q6ZSR9 355 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM179BQ7Z7N9 219 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 LINC01465Q8N7H1 131 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 VAMP8Q9BV40 100 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 KLK11Q9UBX7 282 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 MEX3AA1L020 520 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 J3QT63 122 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 SLC17A2O00624 439 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 FCMRO60667 390 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 CTSVO60911 334 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 HYPMO75409 117 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 HIST1H1DP16402 221 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 SLC6A1P30531 599 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 RPL27AP46776 148 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 HNRNPA3P51991 378 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 METAP1P53582 386 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 VAMP3Q15836 100 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 TEPPQ6URK8 271 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 BCDIN3DQ7Z5W3 292 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 RAB37Q96AX2 223 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 C17orf51A8MQB3 221 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 H3BVH4 76 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 CST7O76096 145 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 RECKO95980 971 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 DNAL4O96015 105 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 BTG1P62324 171 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ARF6P62330 175 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 RELAQ04206 551 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 FMODQ06828 376 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 RNF151Q2KHN1 245 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 PRSS53Q2L4Q9 553 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 SLC25A53Q5H9E4 307 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 PAPPA-AS1Q5QFB9 102 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ZNF841Q6ZN19 808 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 MMD2Q8IY49 270 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ZDHHC22Q8N966 263 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ADAD2Q8NCV1 583 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ABHD14BQ96IU4 210 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 CCL13Q99616 98 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 CFHR5Q9BXR6 569 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 TRGV3P03979 118 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM33P57088 247 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ZNF56Q15929 161 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 GUCD1Q96NT3 240 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 SLC2A9Q9NRM0 540 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 GPR27Q9NS67 375 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 CLEC2DQ9UHP7 191 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ING1Q9UK53 422 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 TSC2P49815 1807 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 CEP250Q9BV73 2442 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ACAA2P42765 397 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 CFAP161Q6P656 301 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 FAM122BQ7Z309 247 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 DTX1Q86Y01 620 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 LINC01560Q8TB33 94 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 RBPMSQ93062 196 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 RNASE6Q93091 150 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 DUX3Q96PT4 197 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 GPX7Q96SL4 187 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 RNF114Q9Y508 228 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 SLC25A20O43772 301 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 CXorf1O96002 111 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 PMCHP20382 165 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 OR52B4Q8NGK2 314 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 OR10G4Q8NGN3 311 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 OR10G9Q8NGN4 311 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 OR10G7Q8NGN6 311 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 DTD1Q8TEA8 209 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 COX14Q96I36 57 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 ZNF256Q9Y2P7 627 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-217ENST00000637988 TRGV2A0A075B6R0 118 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 IGLV3-25P01717 112 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 CPN1P15169 458 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 PI3P19957 117 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 HLA-DRB3P79483 266 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 ACVR1Q04771 509 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 PSG5Q15238 335 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM251Q8N6I4 163 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 CNRIP1Q96F85 164 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-217ENST00000637988 AUNIPQ9H7T9 357 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM218A2RU14 115 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 CGB1A6NKQ9 187 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 CEACAM18A8MTB9 384 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 PPOXP50336 477 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 ERVK11-1P61568 191 aa5.35□□□□□ -1.55
SCN1A-217ENST00000637988 LCN2P80188 198 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms