RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SLC5A7Q9GZV3 580 aa8.8□□□□□ -1
CLN3-248ENST00000636355 FAM212BQ9NTI7 297 aaPredicted RBP8.8□□□□□ -1
CLN3-248ENST00000636355 LIN7CQ9NUP9 197 aaKnown RBP8.8□□□□□ -1
CLN3-248ENST00000636355 RDH8Q9NYR8 311 aa8.8□□□□□ -1
CLN3-248ENST00000636355 TAS2R3Q9NYW6 316 aa8.8□□□□□ -1
CLN3-248ENST00000636355 MAST4O15021 2626 aa8.8□□□□□ -1
CLN3-248ENST00000636355 A8MV72 311 aaPredicted RBP8.79□□□□□ -1
CLN3-248ENST00000636355 GOSR2O14653 212 aa8.79□□□□□ -1
CLN3-248ENST00000636355 TNFRSF13BO14836 293 aaPredicted RBP8.79□□□□□ -1
CLN3-248ENST00000636355 TMPRSS2O15393 492 aa8.79□□□□□ -1
CLN3-248ENST00000636355 IGHV2-70P01814 119 aa8.79□□□□□ -1
CLN3-248ENST00000636355 GYPAP02724 150 aa8.79□□□□□ -1
CLN3-248ENST00000636355 GNRHRP30968 328 aa8.79□□□□□ -1
CLN3-248ENST00000636355 H2BFSP57053 126 aa8.79□□□□□ -1
CLN3-248ENST00000636355 TLE4Q04727 773 aa8.79□□□□□ -1
CLN3-248ENST00000636355 EDDM3AQ14507 147 aa8.79□□□□□ -1
CLN3-248ENST00000636355 TMEM155Q4W5P6 130 aa8.79□□□□□ -1
CLN3-248ENST00000636355 ESCO2Q56NI9 601 aa8.79□□□□□ -1
CLN3-248ENST00000636355 MEX3BQ6ZN04 569 aaKnown RBP8.79□□□□□ -1
CLN3-248ENST00000636355 ZNF645Q8N7E2 425 aa8.79□□□□□ -1
CLN3-248ENST00000636355 ZNRF1Q8ND25 227 aa8.79□□□□□ -1
CLN3-248ENST00000636355 OR2T35Q8NGX2 323 aa8.79□□□□□ -1
CLN3-248ENST00000636355 MRGPRDQ8TDS7 321 aa8.79□□□□□ -1
CLN3-248ENST00000636355 CASTOR1Q8WTX7 329 aa8.79□□□□□ -1
CLN3-248ENST00000636355 SECTM1Q8WVN6 248 aa8.79□□□□□ -1
CLN3-248ENST00000636355 RAB39BQ96DA2 213 aa8.79□□□□□ -1
CLN3-248ENST00000636355 NMES1Q9C002 83 aa8.79□□□□□ -1
CLN3-248ENST00000636355 GAL3ST2Q9H3Q3 398 aa8.79□□□□□ -1
CLN3-248ENST00000636355 CALYQ9NYX4 217 aa8.79□□□□□ -1
CLN3-248ENST00000636355 PIPOXQ9P0Z9 390 aa8.79□□□□□ -1
CLN3-248ENST00000636355 SLC25A10Q9UBX3 287 aaPredicted RBP8.79□□□□□ -1
CLN3-248ENST00000636355 HRNRQ86YZ3 2850 aaPredicted RBP8.79□□□□□ -1
CLN3-248ENST00000636355 RELNP78509 3460 aa8.78□□□□□ -1
CLN3-248ENST00000636355 FLNCQ14315 2725 aa8.78□□□□□ -1
CLN3-248ENST00000636355 IGKV1D-13A0A0B4J2D9 117 aa8.78□□□□□ -1
CLN3-248ENST00000636355 KBTBD11-OT1A0A1B0GTJ5 212 aa8.78□□□□□ -1
CLN3-248ENST00000636355 C19orf84I3L1E1 186 aa8.78□□□□□ -1
CLN3-248ENST00000636355 MPPED1O15442 326 aa8.78□□□□□ -1
CLN3-248ENST00000636355 NDUFB3O43676 98 aa8.78□□□□□ -1
CLN3-248ENST00000636355 YPEL1O60688 119 aa8.78□□□□□ -1
CLN3-248ENST00000636355 RBP4P02753 201 aa8.78□□□□□ -1
CLN3-248ENST00000636355 PET100P0DJ07 73 aa8.78□□□□□ -1
CLN3-248ENST00000636355 CGB3P0DN86 165 aa8.78□□□□□ -1
CLN3-248ENST00000636355 CGB7P0DN87 165 aa8.78□□□□□ -1
CLN3-248ENST00000636355 IGKV1-13P0DP09 117 aa8.78□□□□□ -1
CLN3-248ENST00000636355 PI3P19957 117 aa8.78□□□□□ -1
CLN3-248ENST00000636355 C4BPBP20851 252 aa8.78□□□□□ -1
CLN3-248ENST00000636355 DNASE1P24855 282 aa8.78□□□□□ -1
CLN3-248ENST00000636355 SSTR5P35346 364 aa8.78□□□□□ -1
CLN3-248ENST00000636355 RAB7AP51149 207 aa8.78□□□□□ -1
CLN3-248ENST00000636355 EDDM3BP56851 147 aa8.78□□□□□ -1
CLN3-248ENST00000636355 ANKRD55Q3KP44 614 aa8.78□□□□□ -1
CLN3-248ENST00000636355 FAM201AQ5SY85 155 aa8.78□□□□□ -1
CLN3-248ENST00000636355 GSG1LQ6UXU4 331 aa8.78□□□□□ -1
CLN3-248ENST00000636355 LIAT1Q6ZQX7 453 aa8.78□□□□□ -1
CLN3-248ENST00000636355 NLRC3Q7RTR2 1065 aa8.78□□□□□ -1
CLN3-248ENST00000636355 LGI3Q8N145 548 aa8.78□□□□□ -1
CLN3-248ENST00000636355 ZCCHC24Q8N2G6 241 aaKnown RBP8.78□□□□□ -1
CLN3-248ENST00000636355 FAM216BQ8N7L0 139 aa8.78□□□□□ -1
CLN3-248ENST00000636355 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.78□□□□□ -1
CLN3-248ENST00000636355 ARL11Q969Q4 196 aa8.78□□□□□ -1
CLN3-248ENST00000636355 YPEL2Q96QA6 119 aa8.78□□□□□ -1
CLN3-248ENST00000636355 TMEM222Q9H0R3 208 aa8.78□□□□□ -1
CLN3-248ENST00000636355 CHODLQ9H9P2 273 aa8.78□□□□□ -1
CLN3-248ENST00000636355 OR1A1Q9P1Q5 309 aa8.78□□□□□ -1
CLN3-248ENST00000636355 CLN8Q9UBY8 286 aa8.78□□□□□ -1
CLN3-248ENST00000636355 LRRK2Q5S007 2527 aa8.78□□□□□ -1
CLN3-248ENST00000636355 C3orf85A0A1B0GTC6 90 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 HMSDA8MTL9 139 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 ADAM20O43506 726 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 IFNA21P01568 189 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 SOD3P08294 240 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 RPA2P15927 270 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 F2RP25116 425 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 UCP1P25874 307 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 HOXA4Q00056 320 aaPredicted RBP8.77□□□□□ -1.01
CLN3-248ENST00000636355 CATR1Q13166 79 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 TMEM187Q14656 261 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 SLC9A3R2Q15599 337 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 ZNF818PQ6ZRF7 136 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 PRR18Q8N4B5 295 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 C8orf31Q8N9H6 132 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 OR1L1Q8NH94 360 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 RAB1CQ92928 201 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 DMRTB1Q96MA1 342 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 TMEM56Q96MV1 263 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 CCL13Q99616 98 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 SPIN2AQ99865 258 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 SPIN2BQ9BPZ2 258 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 TMEM246Q9BRR3 403 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 OR2S2Q9NQN1 319 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 ZFP57Q9NU63 452 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 DCAF16Q9NXF7 216 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 MIOXQ9UGB7 285 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 TMED3Q9Y3Q3 217 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 TMEM56-RWDD3S4R434 201 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 DOCK11Q5JSL3 2073 aa8.77□□□□□ -1.01
CLN3-248ENST00000636355 USF3Q68DE3 2245 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 A0A1W2PPH5 198 aa8.76□□□□□ -1.01
CLN3-248ENST00000636355 G3V3Q6 166 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms