RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 A0A087WWC5 75 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 CBY3A6NI87 242 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 SRSF10O75494 262 aaKnown RBP9.52□□□□□ -0.89
CLN3-244ENST00000636147 HOXC12P31275 282 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 LBHQ53QV2 105 aaPredicted RBP9.52□□□□□ -0.89
CLN3-244ENST00000636147 FAM58AQ8N1B3 248 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 OR2V1Q8NHB1 315 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 HSPB9Q9BQS6 159 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 PARLQ9H300 379 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 CLN8Q9UBY8 286 aa9.52□□□□□ -0.89
CLN3-244ENST00000636147 SPTA1P02549 2419 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 PRR19A6NJB7 356 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 HRASP01112 189 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 IGHV3-13P01766 116 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 IGHV3-7P01780 117 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 WNT5AP41221 380 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 AMTP48728 403 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 PTTG1IPP53801 180 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 TCL1AP56279 114 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 JOSD1Q15040 202 aaPredicted RBP9.51□□□□□ -0.89
CLN3-244ENST00000636147 SHHQ15465 462 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 ZNF664Q8N3J9 261 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 MRPL13Q9BYD1 178 aaKnown RBP9.51□□□□□ -0.89
CLN3-244ENST00000636147 MTCH1Q9NZJ7 389 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 SPTBN2O15020 2390 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 E9PLN8 166 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 RRP8O43159 456 aaKnown RBP9.51□□□□□ -0.89
CLN3-244ENST00000636147 EFNA2O43921 213 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 GLB1P16278 677 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 OR10J1P30954 320 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 CDC34P49427 236 aaPredicted RBP9.51□□□□□ -0.89
CLN3-244ENST00000636147 ERVFC1-1P60608 527 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 ERVK-16P61578 105 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 SLC35B1P78383 322 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 RAB31Q13636 194 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 TMEM183BQ1AE95 376 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 TRIM61Q5EBN2 209 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 FBXO46Q6PJ61 603 aaPredicted RBP9.51□□□□□ -0.89
CLN3-244ENST00000636147 IFI44Q8TCB0 444 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 SDF2L1Q9HCN8 221 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 NAT8BQ9UHF3 227 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 PTPRZ1P23471 2315 aaPredicted RBP9.51□□□□□ -0.89
CLN3-244ENST00000636147 A6NNC1 897 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 NDUFB4O95168 129 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 CLPSP04118 112 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 CCL3P10147 92 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 CFPP27918 469 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 PMELP40967 661 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 OR3A1P47881 315 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 HNRNPA3P51991 378 aaKnown RBP9.51□□□□□ -0.89
CLN3-244ENST00000636147 CALHM1Q8IU99 346 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 C1orf147Q96MC9 270 aaPredicted RBP9.51□□□□□ -0.89
CLN3-244ENST00000636147 TM2D1Q9BX74 207 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 LIME1Q9H400 295 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 CDH20Q9HBT6 801 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 TMEM9BQ9NQ34 198 aa9.51□□□□□ -0.89
CLN3-244ENST00000636147 DOCK10Q96BY6 2186 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 A0A1B0GU03 582 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 DEFB108AA8MXU0 73 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 PGLYRP1O75594 196 aaPredicted RBP9.5□□□□□ -0.89
CLN3-244ENST00000636147 PIAS2O75928 621 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 ACTL6BO94805 426 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 CD55P08174 381 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 FGF5P12034 268 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 CA6P23280 308 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 FKBP2P26885 142 aaKnown RBP9.5□□□□□ -0.89
CLN3-244ENST00000636147 MPLP40238 635 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 HYAL1Q12794 435 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 VAMP3Q15836 100 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 PRAMEF5Q5TYX0 476 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 PRAMEF6Q5VXH4 476 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 DMRTA1Q5VZB9 504 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 CXorf67Q86X51 503 aaPredicted RBP9.5□□□□□ -0.89
CLN3-244ENST00000636147 D2HGDHQ8N465 521 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 DTD1Q8TEA8 209 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 PRDM13Q9H4Q3 707 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 CNOT1A5YKK6 2376 aaKnown RBP9.5□□□□□ -0.89
CLN3-244ENST00000636147 IGKV1D-13A0A0B4J2D9 117 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 A0A0J9YW62 118 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 SLC22A20A6NK97 555 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 RPL36A-HNRNPH2H7BZ11 118 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 IGKV1-13P0DP09 117 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 OR5D13Q8NGL4 314 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 OR4A16Q8NH70 328 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 C18orf12Q96KH6 178 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 VPS25Q9BRG1 176 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 CISD1Q9NZ45 108 aaKnown RBP9.5□□□□□ -0.89
CLN3-244ENST00000636147 PCNX3Q9H6A9 2034 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 IGKV3D-11A0A0A0MRZ8 115 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 EREGO14944 169 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 PSG4Q00888 419 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.5□□□□□ -0.89
CLN3-244ENST00000636147 SPSB3Q6PJ21 355 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 BTNL3Q6UXE8 466 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 RABEPKQ7Z6M1 372 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 IL36RNQ9UBH0 155 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 OR2W1Q9Y3N9 320 aa9.5□□□□□ -0.89
CLN3-244ENST00000636147 NCOA6Q14686 2063 aaPredicted RBP9.49□□□□□ -0.89
CLN3-244ENST00000636147 FAM166BA8MTA8 275 aa9.49□□□□□ -0.89
CLN3-244ENST00000636147 PPIHO43447 177 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms