RNA–Protein interactions for RNA: ENST00000635988.1

CACNA1A-220, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 2,548 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-220ENST00000635988 CCL3P10147 92 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 PSG2P11465 335 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 EDN3P14138 238 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 SRP14P37108 136 aaKnown RBP12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 ZNF324BQ6AW86 544 aaPredicted RBP12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 CISD2Q8N5K1 135 aaKnown RBP12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 OR51H1Q8NH63 302 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 TAF15Q92804 592 aaKnown RBP eCLIP12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 ALKBH3Q96Q83 286 aaPredicted RBP12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 WASF3Q9UPY6 502 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 C2CD4DB7Z1M9 353 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 TYMSP04818 313 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 HOXA6P31267 233 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 ERVS71-1P61550 626 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 ARL16Q0P5N6 197 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 PCOLCEQ15113 449 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 CEACAM16Q2WEN9 425 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 BATF2Q8N1L9 274 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 BTF3L4Q96K17 158 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 STRADBQ9C0K7 418 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 USP34Q70CQ2 3546 aa12.63□□□□□ -0.39
CACNA1A-220ENST00000635988 MED12Q93074 2177 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 SNRPCP09234 159 aaKnown RBP12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 IAPPP10997 89 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 GZMHP20718 246 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 ACTL10Q5JWF8 245 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 Q6ZRM9 215 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 COLCA1Q6ZS62 124 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 NECAP1Q8NC96 275 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 OR2T10Q8NGZ9 312 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 KCNE4Q8WWG9 221 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 OR4C12Q96R67 309 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 PROK2Q9HC23 129 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 MANBALQ9NQG1 85 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 LOC102723996A0A087X1L8 192 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 ZNF716A6NP11 495 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 GGCTO75223 188 aaKnown RBP12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 IL18BPO95998 194 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 MBP02144 154 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 SSR4P51571 173 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 CARD18P57730 90 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 PRDX4Q13162 271 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 P2RY6Q15077 328 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 CEACAM21Q3KPI0 293 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 MRPL14Q6P1L8 145 aaKnown RBP12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 KCNIP4Q6PIL6 250 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 HAPLN4Q86UW8 402 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 MRPL30Q8TCC3 161 aaKnown RBP12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 RPUSD4Q96CM3 377 aaKnown RBP12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 PCGF1Q9BSM1 259 aa12.62□□□□□ -0.39
CACNA1A-220ENST00000635988 B4E171 279 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 FAM90A26D6RGX4 464 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 VENTXO95231 258 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 APLNRP35414 380 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 TSPAN7P41732 249 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 ELLP55199 621 aaPredicted RBP12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 MRPL41Q8IXM3 137 aaKnown RBP12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 ZDHHC23Q8IYP9 409 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 SMRP1Q8NCR6 262 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 OR56B2PQ8NGI1 322 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 OR10V1Q8NGI7 309 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 PARLQ9H300 379 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 ERRFI1Q9UJM3 462 aaPredicted RBP12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 A0A1W2PPQ1 181 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 LRRC3CA6NJW4 275 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 DEGS1O15121 323 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 NTF4P34130 210 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 LCN2P80188 198 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 PAX5Q02548 391 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 NRN1LQ496H8 165 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 FAM180AQ6UWF9 173 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 RPP25LQ8N5L8 163 aaKnown RBP12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 FGFBP3Q8TAT2 258 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 PSMF1Q92530 271 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 WDR54Q9H977 334 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 GPR35Q9HC97 309 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 OR6C3Q9NZP0 311 aa12.61□□□□□ -0.39
CACNA1A-220ENST00000635988 CTXND1A0A1B0GTU2 59 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 NPIPB11E5RHQ5 1161 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 HSPB6O14558 160 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 MMP7P09237 267 aaPredicted RBP12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 GPM6AP51674 278 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 SLC38A11Q08AI6 406 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 TMEM37Q8WXS4 190 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 REPIN1Q9BWE0 567 aaKnown RBP12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 SH2D2AQ9NP31 389 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 LIN7CQ9NUP9 197 aaKnown RBP12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 MTCH1Q9NZJ7 389 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 FUT9Q9Y231 359 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 REV3LO60673 3130 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 FGF5P12034 268 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 LTBRP36941 435 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 TNFRSF9Q07011 255 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 ATP6V1FQ16864 119 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 SPANXN5Q5MJ07 72 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 TMEM9BQ9NQ34 198 aa12.6□□□□□ -0.39
CACNA1A-220ENST00000635988 M0R143 59 aa12.59□□□□□ -0.39
CACNA1A-220ENST00000635988 IGKV1-39P01597 117 aa12.59□□□□□ -0.39
CACNA1A-220ENST00000635988 IGKV1D-39P04432 117 aa12.59□□□□□ -0.39
CACNA1A-220ENST00000635988 ERVFC1-1P60608 527 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms