RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 OR8H3Q8N146 312 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 FAM89BQ8N5H3 189 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 C8orf31Q8N9H6 132 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 ZNF439Q8NDP4 499 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 OR52L2PQ8NGH6 319 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 CT45A3Q8NHU0 189 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 FAM3DQ96BQ1 224 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 AKR1E2Q96JD6 320 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 URM1Q9BTM9 101 aaKnown RBP11.34□□□□□ -0.59
PNKP-223ENST00000629179 RAB9BQ9NP90 201 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 OR2S2Q9NQN1 319 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 PLEKHJ1Q9NW61 149 aa11.34□□□□□ -0.59
PNKP-223ENST00000629179 TRAV1-2A0A0B4J238 106 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 IGHV1-3A0A0C4DH29 117 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 PDCD5O14737 125 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 TSPAN15O95858 294 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 GAPDHP04406 335 aaKnown RBP11.33□□□□□ -0.6
PNKP-223ENST00000629179 AMY1AP04745 511 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 AMY2AP04746 511 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 VDAC2P45880 294 aaPredicted RBP11.33□□□□□ -0.6
PNKP-223ENST00000629179 VEGFCP49767 419 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 PSMD7P51665 324 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 OR10A3P58181 314 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 ZNF816Q0VGE8 651 aaPredicted RBP11.33□□□□□ -0.6
PNKP-223ENST00000629179 PLA2G7Q13093 441 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 HES1Q14469 280 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 HNF4GQ14541 408 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 GNMTQ14749 295 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 Q3ZCU0 254 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 ABCA11PQ4W5N1 156 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 MORN2Q502X0 79 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 C22orf42Q6IC83 251 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 Q6ZPA2 131 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 SLC25A48Q6ZT89 311 aaKnown RBP11.33□□□□□ -0.6
PNKP-223ENST00000629179 MOB3BQ86TA1 216 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 ST6GALNAC6Q969X2 333 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 STEAP1Q9UHE8 339 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 PLXNB1O43157 2135 aa11.33□□□□□ -0.6
PNKP-223ENST00000629179 IGHV3-72A0A0B4J1Y9 119 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 TMEM272A0A1B0GTI8 110 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 FOXI3A8MTJ6 420 aaPredicted RBP11.32□□□□□ -0.6
PNKP-223ENST00000629179 LDLRAD4O15165 306 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 PEX14O75381 377 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 NAPSAO96009 420 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 IGKV1D-33P01593 117 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 IGKV1-33P01594 117 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 LPLP06858 475 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 TMEM11P17152 192 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 MYL9P24844 172 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 PPP1CCP36873 323 aaKnown RBP11.32□□□□□ -0.6
PNKP-223ENST00000629179 TMEM50BP56557 158 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 TMEM30BQ3MIR4 351 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 ZNF773Q6PK81 442 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 ZNF554Q86TJ5 538 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 SETD6Q8TBK2 473 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 WIPF2Q8TF74 440 aaPredicted RBP11.32□□□□□ -0.6
PNKP-223ENST00000629179 FCGR1BQ92637 280 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 HDHD3Q9BSH5 251 aaPredicted RBP11.32□□□□□ -0.6
PNKP-223ENST00000629179 WNT10AQ9GZT5 417 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 CHMP1AQ9HD42 196 aaPredicted RBP11.32□□□□□ -0.6
PNKP-223ENST00000629179 AK3Q9UIJ7 227 aa11.32□□□□□ -0.6
PNKP-223ENST00000629179 SMIM30A4D0T7 59 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 FBXO24O75426 580 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 CD28P10747 220 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 RAB3BP20337 219 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 GALP22466 123 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 IL3RAP26951 378 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 HMGN3Q15651 99 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 C9orf152Q5JTZ5 239 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 ZNF880Q6PDB4 577 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 NR2C2APQ86WQ0 139 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 LYG1Q8N1E2 194 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 FAM110DQ8TAY7 271 aaPredicted RBP11.31□□□□□ -0.6
PNKP-223ENST00000629179 RTN4IP1Q8WWV3 396 aaPredicted RBP11.31□□□□□ -0.6
PNKP-223ENST00000629179 GALMQ96C23 342 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 RBMXL1Q96E39 390 aaKnown RBP11.31□□□□□ -0.6
PNKP-223ENST00000629179 ARHGAP5-AS1Q96IT6 56 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 PECRQ9BY49 303 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 TXNL4BQ9NX01 149 aaKnown RBP11.31□□□□□ -0.6
PNKP-223ENST00000629179 RAB22AQ9UL26 194 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 MOB4Q9Y3A3 225 aa11.31□□□□□ -0.6
PNKP-223ENST00000629179 A0A0B4J203 849 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 IFITM5A6NNB3 132 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 ZNF736B4DX44 427 aaPredicted RBP11.3□□□□□ -0.6
PNKP-223ENST00000629179 CSF1P09603 554 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 HTD2P86397 168 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 C2orf68Q2NKX9 166 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 PLAC9Q5JTB6 97 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 IL1F10Q8WWZ1 152 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 MMP27Q9H306 513 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 JPT1Q9UK76 154 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 HSF4Q9ULV5 492 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 STUB1Q9UNE7 303 aa11.3□□□□□ -0.6
PNKP-223ENST00000629179 TRBV6-6A0A0A6YYG2 114 aa11.29□□□□□ -0.6
PNKP-223ENST00000629179 M0QZK8 103 aa11.29□□□□□ -0.6
PNKP-223ENST00000629179 YPEL1O60688 119 aa11.29□□□□□ -0.6
PNKP-223ENST00000629179 SLC2A2P11168 524 aaPredicted RBP11.29□□□□□ -0.6
PNKP-223ENST00000629179 FGF9P31371 208 aaPredicted RBP11.29□□□□□ -0.6
PNKP-223ENST00000629179 RANBP1P43487 201 aa11.29□□□□□ -0.6
PNKP-223ENST00000629179 ZNF137PP52743 207 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms