RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TAF15Q92804 592 aaKnown RBP eCLIP7.79□□□□□ -1.16
VCL-206ENST00000623461 MRGPRX1Q96LB2 322 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 TRAV9-1A0A075B6T8 112 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 TRAV14DV4A0A0A6YYC5 116 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 OR2W5A6NFC9 320 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 FAM90A26D6RGX4 464 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 COL8A1P27658 744 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 OR8A1Q8NGG7 326 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 PSMG3Q9BT73 122 aaPredicted RBP7.79□□□□□ -1.16
VCL-206ENST00000623461 RNF222A6NCQ9 220 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 IFI6P09912 130 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 HES1Q14469 280 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 DNLZQ5SXM8 178 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 C5orf17Q8NAS9 161 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 MYOZ3Q8TDC0 251 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 MOB3AQ96BX8 217 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 MKRN2OSH3BPM6 223 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 PSG2P11465 335 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 STARD6P59095 220 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 SCGB1D4Q6XE38 83 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 SSX8Q7RTT4 187 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 RLN3Q8WXF3 142 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 MARS2Q96GW9 593 aaKnown RBP7.79□□□□□ -1.16
VCL-206ENST00000623461 SH3BGRL3Q9H299 93 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.79□□□□□ -1.16
VCL-206ENST00000623461 A8MWL6 223 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 LEPROTL1O95214 131 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 LINC00614P0C842 121 aa7.79□□□□□ -1.16
VCL-206ENST00000623461 EIF4EBP2Q13542 120 aaPredicted RBP7.79□□□□□ -1.16
VCL-206ENST00000623461 JOSD1Q15040 202 aaPredicted RBP7.79□□□□□ -1.16
VCL-206ENST00000623461 A0A0G2JK05 382 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 LIPT2A6NK58 231 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 F8VVB4 439 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 F8VWA3 439 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 HLA-DRB1P01911 266 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 SRP19P09132 144 aaKnown RBP7.78□□□□□ -1.16
VCL-206ENST00000623461 ZNF708P17019 499 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 MFAP2P55001 183 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 KLF3P57682 345 aaPredicted RBP7.78□□□□□ -1.16
VCL-206ENST00000623461 ALKBH3Q96Q83 286 aaPredicted RBP7.78□□□□□ -1.16
VCL-206ENST00000623461 TWSG1Q9GZX9 223 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 DPRXA6NFQ7 191 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 ASAH2BP0C7U1 165 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 CD1BP29016 333 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 SPINK9Q5DT21 86 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 RIPPLY2Q5TAB7 128 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 OR8I2Q8N0Y5 310 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 LRRC75AQ8NAA5 344 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 OR1L1Q8NH94 360 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 TMEM45BQ96B21 275 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 SLC25A33Q9BSK2 321 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 SPTBP11277 2137 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 A0A0U1RQV5 110 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 B4E171 279 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 FAM157BP0CG42 384 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 TMEM136Q6ZRR5 245 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 WDYHV1Q96HA8 205 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 QTRT1Q9BXR0 403 aaKnown RBP7.78□□□□□ -1.16
VCL-206ENST00000623461 HEXA-AS1Q9H8Q6 139 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 SCN1AP35498 2009 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 M0R296 226 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 CA3P07451 260 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 UCP3P55916 312 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 CLDN18P56856 261 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 SRSF9Q13242 221 aaKnown RBP eCLIP7.78□□□□□ -1.16
VCL-206ENST00000623461 IBA57Q5T440 356 aaKnown RBP7.78□□□□□ -1.16
VCL-206ENST00000623461 MRPL52Q86TS9 123 aaKnown RBP7.78□□□□□ -1.16
VCL-206ENST00000623461 REG4Q9BYZ8 158 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 AUP1Q9Y679 476 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 INTS1Q8N201 2190 aaKnown RBP7.78□□□□□ -1.16
VCL-206ENST00000623461 SFRP2Q96HF1 295 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 KLF13Q9Y2Y9 288 aaPredicted RBP7.78□□□□□ -1.16
VCL-206ENST00000623461 FGF5P12034 268 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 UQCRFS1P47985 274 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 KHDC1LQ5JSQ8 128 aa7.78□□□□□ -1.16
VCL-206ENST00000623461 H3BVH4 76 aa7.77□□□□□ -1.16
VCL-206ENST00000623461 NPBWR2P48146 333 aa7.77□□□□□ -1.16
VCL-206ENST00000623461 TGIF1Q15583 401 aa7.77□□□□□ -1.16
VCL-206ENST00000623461 ZPLD1Q8TCW7 415 aa7.77□□□□□ -1.16
VCL-206ENST00000623461 NPVFQ9HCQ7 196 aa7.77□□□□□ -1.16
VCL-206ENST00000623461 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.77□□□□□ -1.17
VCL-206ENST00000623461 SLX1AQ9BQ83 275 aa7.77□□□□□ -1.17
VCL-206ENST00000623461 SF3B5Q9BWJ5 86 aaKnown RBP7.77□□□□□ -1.17
VCL-206ENST00000623461 AURKAIP1Q9NWT8 199 aaPredicted RBP7.77□□□□□ -1.17
VCL-206ENST00000623461 PRNDQ9UKY0 176 aa7.77□□□□□ -1.17
VCL-206ENST00000623461 BRCA1P38398 1863 aaKnown RBP7.77□□□□□ -1.17
VCL-206ENST00000623461 A0A1B0GTI1 187 aa7.77□□□□□ -1.17
VCL-206ENST00000623461 SHISA3A0PJX4 238 aa7.77□□□□□ -1.17
VCL-206ENST00000623461 CRYABP02511 175 aaKnown RBP7.77□□□□□ -1.17
VCL-206ENST00000623461 S100A4P26447 101 aaKnown RBP7.77□□□□□ -1.17
VCL-206ENST00000623461 PMELP40967 661 aa7.77□□□□□ -1.17
VCL-206ENST00000623461 COMPP49747 757 aaPredicted RBP7.77□□□□□ -1.17
VCL-206ENST00000623461 NUTF2P61970 127 aaKnown RBP7.77□□□□□ -1.17
VCL-206ENST00000623461 COL10A1Q03692 680 aa7.77□□□□□ -1.17
VCL-206ENST00000623461 PTCRAQ6ISU1 281 aaPredicted RBP7.77□□□□□ -1.17
VCL-206ENST00000623461 PRSS41Q7RTY9 318 aa7.77□□□□□ -1.17
VCL-206ENST00000623461 SELENOHQ8IZQ5 122 aaKnown RBP7.77□□□□□ -1.17
VCL-206ENST00000623461 BEND2Q8NDZ0 799 aa7.77□□□□□ -1.17
VCL-206ENST00000623461 Q8WTZ3 238 aa7.77□□□□□ -1.17
VCL-206ENST00000623461 FOXQ1Q9C009 403 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms