RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TMEM158Q8WZ71 300 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 ABCG5Q9H222 651 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 MMP28Q9H239 520 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 DPAGT1Q9H3H5 408 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 Q9N2K0 584 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 TNFRSF19Q9NS68 423 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 CCDC59Q9P031 241 aaKnown RBP13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 DPM3Q9P2X0 92 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 GNG12Q9UBI6 72 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 ELF5Q9UKW6 265 aaPredicted RBP13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 MRPS15P82914 257 aaKnown RBP13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 HTD2P86397 168 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 SAMD12Q8N8I0 201 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 FAM216AQ8WUB2 273 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 CREB3L1Q96BA8 519 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 PHF21AQ96BD5 680 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 GALMQ96C23 342 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 MDFIQ99750 246 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 SSX3Q99909 188 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 CHIAQ9BZP6 476 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 OR2S2Q9NQN1 319 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 MGAT4AQ9UM21 535 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 HILPDAQ9Y5L2 63 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 COL6A5A8TX70 2615 aa13.38□□□□□ -0.27
CCDC28A-202ENST00000611852 A0A0A6YYH2 397 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 A0A1W2PPE3 182 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 A6NJ64 397 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 VGLL3A8MV65 326 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 LEUTXA8MZ59 168 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 LY6LH3BQJ8 138 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 FCGR3AP08637 254 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 GSTP1P09211 210 aaKnown RBP13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 SOX6P35712 828 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 AANATQ16613 207 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 LRRC75BQ2VPJ9 315 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 ZNF260Q3ZCT1 412 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 Q3ZCU0 254 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 UBE2NLQ5JXB2 153 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 C8orf31Q8N9H6 132 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 OR52L2PQ8NGH6 319 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 OR10V1Q8NGI7 309 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 JPT1Q9UK76 154 aa13.37□□□□□ -0.27
CCDC28A-202ENST00000611852 TMEM235A6NFC5 223 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 RNF212BA8MTL3 300 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 CEACAM3P40198 252 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 HLA-DRB3P79483 266 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 ARFRP1Q13795 201 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 GNMTQ14749 295 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 MORN2Q502X0 79 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 PLA1AQ53H76 456 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 HACD4Q5VWC8 232 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 C16orf87Q6PH81 154 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 LINC00311Q8N616 119 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 ZNF439Q8NDP4 499 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 OR5R1Q8NH85 324 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 IL1F10Q8WWZ1 152 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 ACOT12Q8WYK0 555 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 DIABLOQ9NR28 239 aa13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 AMMECR1Q9Y4X0 333 aaPredicted RBP13.36□□□□□ -0.27
CCDC28A-202ENST00000611852 TRAV18A0A075B6X5 111 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 BTBD17A6NE02 478 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 H3BUX3 64 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 SCTP09683 121 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 PPP1CCP36873 323 aaKnown RBP13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 ZNF134P52741 427 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 TPTE2P1Q5T6R2 138 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 OR10X1Q8NGY0 326 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 PIFOQ8TCI5 191 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 S100A16Q96FQ6 103 aaKnown RBP13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 C19orf24Q9BVV8 132 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 COMMD3Q9UBI1 195 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 ZNF230Q9UIE0 474 aaPredicted RBP13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 VPREB3Q9UKI3 123 aa13.35□□□□□ -0.27
CCDC28A-202ENST00000611852 TRDCB7Z8K6 153 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 SLC31A2O15432 143 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 TALDO1P37837 337 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 RAB13P51153 203 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 MADCAM1Q13477 382 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 PNLIPRP3Q17RR3 467 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 CT45A1Q5HYN5 189 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 STEAP3Q658P3 488 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 LINC00299Q6ZSB3 139 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 SLC25A48Q6ZT89 311 aaKnown RBP13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 CT45A3Q8NHU0 189 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 MCFD2Q8NI22 146 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 OCSTAMPQ9BR26 566 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 SLIRPQ9GZT3 109 aaKnown RBP13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 OOSP1A8MZH6 123 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 XRCC3O43542 346 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 YPEL1O60688 119 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 EIF4EP06730 217 aaKnown RBP13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 DTYMKP23919 212 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 DYNLT3P51808 116 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 GNG2P59768 71 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 PITPNAQ00169 270 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 SRSF7Q16629 238 aaKnown RBP eCLIP13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 LY6G6FQ5SQ64 297 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 IZUMO1Q8IYV9 350 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 NUDCD2Q8WVJ2 157 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms