RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 NPIPB11E5RHQ5 1161 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 C15orf65H3BRN8 121 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 CLDN34H7C241 214 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 MMP23AO75900 390 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 DHFRP00374 187 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 GSTP1P09211 210 aaKnown RBP7.13□□□□□ -1.27
TRIM28-214ENST00000600840 PTHLHP12272 177 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 GNB3P16520 340 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 NDUFB7P17568 137 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 RFX2P48378 723 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 DLX1P56177 255 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 KRTAP10-3P60369 221 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 ERVFRD-1P60508 538 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 PRB3Q04118 309 aaPredicted RBP7.13□□□□□ -1.27
TRIM28-214ENST00000600840 DYRK1AQ13627 763 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 RBM39Q14498 530 aaKnown RBP7.13□□□□□ -1.27
TRIM28-214ENST00000600840 ATXN7L3Q14CW9 347 aaPredicted RBP7.13□□□□□ -1.27
TRIM28-214ENST00000600840 SRSF7Q16629 238 aaKnown RBP eCLIP7.13□□□□□ -1.27
TRIM28-214ENST00000600840 C17orf58Q2M2W7 97 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 UTF1Q5T230 341 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 CD276Q5ZPR3 534 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 C1orf122Q6ZSJ8 110 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 DTX3Q8N9I9 347 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 OR13A1Q8NGR1 328 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 PPP1R35Q8TAP8 253 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 S100A16Q96FQ6 103 aaKnown RBP7.13□□□□□ -1.27
TRIM28-214ENST00000600840 NEDD4LQ96PU5 975 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 HDHD3Q9BSH5 251 aaPredicted RBP7.13□□□□□ -1.27
TRIM28-214ENST00000600840 MARVELD1Q9BSK0 173 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 PCGF1Q9BSM1 259 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 C11orf54Q9H0W9 315 aaPredicted RBP7.13□□□□□ -1.27
TRIM28-214ENST00000600840 SIRPDQ9H106 197 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 PLEKHJ1Q9NW61 149 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 ING3Q9NXR8 418 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 KIF25Q9UIL4 384 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 ANAPC10Q9UM13 185 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 TRAV18A0A075B6X5 111 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 IGKV1D-8A0A087WSZ0 117 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 TRAV39A0A0B4J263 110 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 FAM181BA6NEQ2 426 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 SERPINE3A8MV23 424 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 HSPB6O14558 160 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 RGS13O14921 159 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 SCGNO76038 276 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 LIPFP07098 398 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 GSTT2BP0CG30 244 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 CCL3L1P16619 93 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 RCC1P18754 421 aaPredicted RBP7.12□□□□□ -1.27
TRIM28-214ENST00000600840 GDNFP39905 211 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 TAS2R20P59543 309 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 RPL31P62899 125 aaKnown RBP7.12□□□□□ -1.27
TRIM28-214ENST00000600840 PNLIPRP3Q17RR3 467 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 ZFP69Q49AA0 526 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 KRBOX4Q5JUW0 171 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 NKAPLQ5M9Q1 402 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 HCP5Q6MZN7 132 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 Q6YL49 198 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 Q6ZS49 121 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 PDZD9Q8IXQ8 264 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 IZUMO1Q8IYV9 350 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 TCTE3Q8IZS6 198 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 OR6F1Q8NGZ6 308 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 OCSTAMPQ9BR26 566 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 CHIAQ9BZP6 476 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 Q9N2K0 584 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 DIABLOQ9NR28 239 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 TAS2R3Q9NYW6 316 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 UBE2J1Q9Y385 318 aaPredicted RBP7.12□□□□□ -1.27
TRIM28-214ENST00000600840 NUBP2Q9Y5Y2 271 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 LINC00312Q9Y6C7 94 aa7.12□□□□□ -1.27
TRIM28-214ENST00000600840 IGKV1-6A0A0C4DH72 117 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 KBTBD11-OT1A0A1B0GTJ5 212 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 hADV38S2A0JD32 116 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 TMEM30CPA0ZSE6 113 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 MEX3AA1L020 520 aaKnown RBP7.11□□□□□ -1.27
TRIM28-214ENST00000600840 TMEM235A6NFC5 223 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 C12orf77C9JDV5 145 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 PLA2G10O15496 165 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 ENSAO43768 121 aaKnown RBP7.11□□□□□ -1.27
TRIM28-214ENST00000600840 TOX4O94842 621 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 SPNP16150 400 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 NAT1P18440 290 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 GZMHP20718 246 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 SLC6A1P30531 599 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 EDDM3BP56851 147 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 ARF6P62330 175 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 EDDM3AQ14507 147 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 ARL6IP1Q15041 203 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 HMGN3Q15651 99 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 FBLN7Q53RD9 439 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 ZNF57Q68EA5 555 aaPredicted RBP7.11□□□□□ -1.27
TRIM28-214ENST00000600840 FAM53AQ6NSI3 398 aaPredicted RBP7.11□□□□□ -1.27
TRIM28-214ENST00000600840 KIR3DL3Q8N743 410 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 OR4K15Q8NH41 348 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 GPX8Q8TED1 209 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 H1FXQ92522 213 aaKnown RBP7.11□□□□□ -1.27
TRIM28-214ENST00000600840 LHX4Q969G2 390 aa7.11□□□□□ -1.27
TRIM28-214ENST00000600840 ZNF486Q96H40 463 aaPredicted RBP7.11□□□□□ -1.27
TRIM28-214ENST00000600840 THAP7Q9BT49 309 aaPredicted RBP7.11□□□□□ -1.27
TRIM28-214ENST00000600840 DPAGT1Q9H3H5 408 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms