RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PSG4Q00888 419 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 RAB32Q13637 225 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 SAXO1Q8IYX7 474 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 C1orf162Q8NEQ5 155 aaPredicted RBP17.77■□□□□ 0.44
UPF1-207ENST00000599848 TOLLIPQ9H0E2 274 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 ISLRO14498 428 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 PGA4P0DJD7 388 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 PGA5P0DJD9 388 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 PMCHP20382 165 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 HNRNPA3P51991 378 aaKnown RBP17.77■□□□□ 0.44
UPF1-207ENST00000599848 SPINK9Q5DT21 86 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 FAM57AQ8TBR7 257 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 CCL28Q9NRJ3 127 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 NAT2P11245 290 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 NXF2Q9GZY0 626 aaKnown RBP17.77■□□□□ 0.44
UPF1-207ENST00000599848 SLC35B3Q9H1N7 401 aa17.77■□□□□ 0.44
UPF1-207ENST00000599848 TTC3P53804 2025 aa17.77■□□□□ 0.43
UPF1-207ENST00000599848 RREB1Q92766 1687 aa17.77■□□□□ 0.43
UPF1-207ENST00000599848 SCGB1D4Q6XE38 83 aa17.77■□□□□ 0.43
UPF1-207ENST00000599848 KNL1Q8NG31 2342 aa17.77■□□□□ 0.43
UPF1-207ENST00000599848 KLF7O75840 302 aaPredicted RBP17.76■□□□□ 0.43
UPF1-207ENST00000599848 SEZ6L2Q6UXD5 910 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 GSX1Q9H4S2 264 aaPredicted RBP17.76■□□□□ 0.43
UPF1-207ENST00000599848 C1QTNF12Q5T7M4 302 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 OR10G8Q8NGN5 311 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 PACRGQ96M98 296 aaPredicted RBP17.76■□□□□ 0.43
UPF1-207ENST00000599848 C17orf51A8MQB3 221 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 MUC1P15941 1255 aaPredicted RBP17.76■□□□□ 0.43
UPF1-207ENST00000599848 BPIFA4PQ86YQ2 179 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 BVESQ8NE79 360 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 LURAP1Q96LR2 239 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 VAMP8Q9BV40 100 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 A0A1W2PNV4 684 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 MAS1LP35410 378 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 TXNDC17Q9BRA2 123 aa17.76■□□□□ 0.43
UPF1-207ENST00000599848 FCARP24071 287 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 MSRB3Q8IXL7 192 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 MRPS16Q9Y3D3 137 aaKnown RBP17.75■□□□□ 0.43
UPF1-207ENST00000599848 RTN4RL2Q86UN3 420 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 NPVFQ9HCQ7 196 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 STRCQ7RTU9 1775 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 ANKRD20A5PA0PJZ0 165 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 CDC42EP2O14613 210 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 MPC2O95563 127 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 CLDN18P56856 261 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 PLAURQ03405 335 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 DPPA3Q6W0C5 159 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 JPT1Q9UK76 154 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 LGALSLQ3ZCW2 172 aaPredicted RBP17.75■□□□□ 0.43
UPF1-207ENST00000599848 GALNT14Q96FL9 552 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 PAXXQ9BUH6 204 aa17.75■□□□□ 0.43
UPF1-207ENST00000599848 MMP9P14780 707 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 TGIF1Q15583 401 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 PILRAQ9UKJ1 303 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 OR4C45A6NMZ5 311 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 PEBP1P30086 187 aaKnown RBP17.74■□□□□ 0.43
UPF1-207ENST00000599848 HIST1H3AP68431 136 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 J3KRW8 73 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 PSMB2P49721 201 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 RNASE6Q93091 150 aaKnown RBP17.74■□□□□ 0.43
UPF1-207ENST00000599848 RGS13O14921 159 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 IGF2P01344 180 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 CD1AP06126 327 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 GLRXP35754 106 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 WDR25Q64LD2 544 aaPredicted RBP17.74■□□□□ 0.43
UPF1-207ENST00000599848 Q6ZT83 130 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 LINC00470Q9BZP3 86 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 NPIPB11E5RHQ5 1161 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 TFPI2P48307 235 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 POLR2GP62487 172 aaKnown RBP eCLIP17.74■□□□□ 0.43
UPF1-207ENST00000599848 SLC35E3Q7Z769 313 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 ZNF385DQ9H6B1 395 aa17.74■□□□□ 0.43
UPF1-207ENST00000599848 A0A1W2PR77 199 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 CEACAM18A8MTB9 384 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 VAMP3Q15836 100 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 CDC42EP3Q9UKI2 254 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 C11orf94C9JXX5 98 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 M0QZK8 103 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 G6PCP35575 357 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 PTGDSP41222 190 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 DYNLT3P51808 116 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 SLC7A5P1Q8MH63 180 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 LOC101059948A0A1B0GTJ6 334 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 REG1BP48304 166 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 GZMKP49863 264 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 IQCJQ1A5X6 159 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 PAPPA-AS1Q5QFB9 102 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 NPFFR1Q9GZQ6 430 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 SLC6A13Q9NSD5 602 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 CALYQ9NYX4 217 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 METRNQ9UJH8 293 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 CAMPP49913 170 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 ANGPTL6Q8NI99 470 aa17.73■□□□□ 0.43
UPF1-207ENST00000599848 CTXND1A0A1B0GTU2 59 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 B4DEV8 164 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 HBZP02008 142 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 PEMTQ9UBM1 199 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 MYH14Q7Z406 1995 aaKnown RBP17.72■□□□□ 0.43
UPF1-207ENST00000599848 ODAMA1E959 279 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 TMEM8BA6NDV4 472 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms