RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 DTX3Q8N9I9 347 aa11.44□□□□□ -0.58
SHKBP1-217ENST00000598558 MAFIPQ8WZ33 124 aa11.44□□□□□ -0.58
SHKBP1-217ENST00000598558 DPAGT1Q9H3H5 408 aa11.44□□□□□ -0.58
SHKBP1-217ENST00000598558 ZNF230Q9UIE0 474 aaPredicted RBP11.44□□□□□ -0.58
SHKBP1-217ENST00000598558 SPATA2Q9UM82 520 aa11.44□□□□□ -0.58
SHKBP1-217ENST00000598558 IGKV1D-8A0A087WSZ0 117 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 LEUTXA8MZ59 168 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 SSX5O60225 188 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 HKR1P10072 659 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 RPL5P46777 297 aaKnown RBP11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 SPCS2Q15005 226 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 AANATQ16613 207 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 MORN2Q502X0 79 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 TRAT1Q6PIZ9 186 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 ZNF554Q86TJ5 538 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 CLVS1Q8IUQ0 354 aaPredicted RBP11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 LINC00311Q8N616 119 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 ST6GALNAC6Q969X2 333 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 RIMS4Q9H426 269 aaPredicted RBP11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 C12orf4Q9NQ89 552 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 OR2S2Q9NQN1 319 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 KCNIP1Q9NZI2 227 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 C1RLQ9NZP8 487 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 ABRACLQ9P1F3 81 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 VPREB3Q9UKI3 123 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 ETV7Q9Y603 341 aa11.43□□□□□ -0.58
SHKBP1-217ENST00000598558 A6NDX4 124 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 CHST1O43916 411 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 FCGR3AP08637 254 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 CD3GP09693 182 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 PTHLHP12272 177 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 SCAND1P57086 179 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 HTD2P86397 168 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 HERPUD1Q15011 391 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 SLC25A48Q6ZT89 311 aaKnown RBP11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 C8orf31Q8N9H6 132 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 DCSTAMPQ9H295 470 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 OR1A1Q9P1Q5 309 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 GNG12Q9UBI6 72 aa11.42□□□□□ -0.58
SHKBP1-217ENST00000598558 TRAV18A0A075B6X5 111 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 A0A1W2PPI3 338 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 TMEM235A6NFC5 223 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 GSTT2P0CG29 244 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 GSTT2BP0CG30 244 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 DYNLT3P51808 116 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 ACTG1P63261 375 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 HLA-DRB3P79483 266 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 TMEM219Q86XT9 240 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 ODF3L1Q8IXM7 274 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 OR5R1Q8NH85 324 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 NUDCD2Q8WVJ2 157 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 IL1F10Q8WWZ1 152 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 CFHR4Q92496 578 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 GALMQ96C23 342 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 OCSTAMPQ9BR26 566 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 ABCG5Q9H222 651 aa11.41□□□□□ -0.58
SHKBP1-217ENST00000598558 SERPINE3A8MV23 424 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 TRDCB7Z8K6 153 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 YPEL1O60688 119 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 REG1BP48304 166 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 Q3ZCU0 254 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 IGSF11Q5DX21 431 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 HACD4Q5VWC8 232 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 Q6ZSV7 163 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 MOB1BQ7L9L4 216 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 CROCCP3Q8IVE0 287 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 SAMD12Q8N8I0 201 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 OR10X1Q8NGY0 326 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 GCDHQ92947 438 aaPredicted RBP11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 YPEL2Q96QA6 119 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 COMMD3Q9UBI1 195 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 JPT1Q9UK76 154 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 TCF19Q9Y242 345 aa11.4□□□□□ -0.58
SHKBP1-217ENST00000598558 FAM90A9PA6NNJ1 464 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 ZNF736B4DX44 427 aaPredicted RBP11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 TIMM23O14925 209 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 TMEM127O75204 238 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 EIF4EP06730 217 aaKnown RBP11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 GSTP1P09211 210 aaKnown RBP11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 MDKP21741 143 aaPredicted RBP11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 COMPP49747 757 aaPredicted RBP11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 MADCAM1Q13477 382 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 ARFRP1Q13795 201 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 TMEM30BQ3MIR4 351 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 AWAT1Q58HT5 328 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 Q6ZS46 218 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 DRAM1Q8N682 238 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 TOMM40LQ969M1 308 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 AUNIPQ9H7T9 357 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 CEPT1Q9Y6K0 416 aa11.39□□□□□ -0.59
SHKBP1-217ENST00000598558 IGHV3-72A0A0B4J1Y9 119 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 BTBD17A6NE02 478 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 POM121CA8CG34 1229 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 OOSP1A8MZH6 123 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 ST8SIA5O15466 376 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 FABP7O15540 132 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 HPGDSO60760 199 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 PROP1O75360 226 aa11.38□□□□□ -0.59
SHKBP1-217ENST00000598558 CEACAM3P40198 252 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms