RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 GAPDHP04406 335 aaKnown RBP12.95□□□□□ -0.34
TRIM28-206ENST00000595974 SNRNP70P08621 437 aaKnown RBP12.95□□□□□ -0.34
TRIM28-206ENST00000595974 VDAC2P45880 294 aaPredicted RBP12.95□□□□□ -0.34
TRIM28-206ENST00000595974 ZNF137PP52743 207 aa12.95□□□□□ -0.34
TRIM28-206ENST00000595974 BLCAPP62952 87 aa12.95□□□□□ -0.34
TRIM28-206ENST00000595974 DIAPH2-AS1Q14236 149 aa12.95□□□□□ -0.34
TRIM28-206ENST00000595974 C2orf68Q2NKX9 166 aa12.95□□□□□ -0.34
TRIM28-206ENST00000595974 FBLN7Q53RD9 439 aa12.95□□□□□ -0.34
TRIM28-206ENST00000595974 FAM89BQ8N5H3 189 aa12.95□□□□□ -0.34
TRIM28-206ENST00000595974 DRAM1Q8N682 238 aa12.95□□□□□ -0.34
TRIM28-206ENST00000595974 ZNF439Q8NDP4 499 aa12.95□□□□□ -0.34
TRIM28-206ENST00000595974 OR51D1Q8NGF3 324 aa12.95□□□□□ -0.34
TRIM28-206ENST00000595974 MOB4Q9Y3A3 225 aa12.95□□□□□ -0.34
TRIM28-206ENST00000595974 SHISA3A0PJX4 238 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 TXNL1O43396 289 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 PEX14O75381 377 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 NAPSAO96009 420 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 LPLP06858 475 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 CLDN12P56749 244 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 HTD2P86397 168 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 HMGN3Q15651 99 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 KCTD21Q4G0X4 260 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 HES5Q5TA89 166 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 STEAP3Q658P3 488 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 C22orf42Q6IC83 251 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 FAM53AQ6NSI3 398 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-206ENST00000595974 OR10V1Q8NGI7 309 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 ST6GALNAC6Q969X2 333 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 GALMQ96C23 342 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 WNT10AQ9GZT5 417 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 MMP27Q9H306 513 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 RIMS4Q9H426 269 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-206ENST00000595974 OR2S2Q9NQN1 319 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 HSF4Q9ULV5 492 aa12.94□□□□□ -0.34
TRIM28-206ENST00000595974 TRBV6-6A0A0A6YYG2 114 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 IGHV1-3A0A0C4DH29 117 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 IFITM5A6NNB3 132 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 FOXI3A8MTJ6 420 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-206ENST00000595974 LDLRAD4O15165 306 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 SLC31A2O15432 143 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 SOCS1O15524 211 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 TMEM11P17152 192 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 RAB3BP20337 219 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 FGF9P31371 208 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-206ENST00000595974 OR10A3P58181 314 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 HES1Q14469 280 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 C2orf76Q3KRA6 126 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 CT45A1Q5HYN5 189 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 ZNF880Q6PDB4 577 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 Q6ZS46 218 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 IZUMO1Q8IYV9 350 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 OR56B1Q8NGI3 324 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 CT45A3Q8NHU0 189 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 WIPF2Q8TF74 440 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-206ENST00000595974 RTN4IP1Q8WWV3 396 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-206ENST00000595974 CHMP1AQ9HD42 196 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-206ENST00000595974 ABRACLQ9P1F3 81 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 STUB1Q9UNE7 303 aa12.93□□□□□ -0.34
TRIM28-206ENST00000595974 TMEM272A0A1B0GTI8 110 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 YPEL1O60688 119 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 FBXO24O75426 580 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 RGS11O94810 467 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 IGKV1D-33P01593 117 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 IGKV1-33P01594 117 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 AMY1AP04745 511 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 AMY2AP04746 511 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 REG1BP48304 166 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 VEGFCP49767 419 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 EBI3Q14213 229 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 TMEM95Q3KNT9 176 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 ABCA11PQ4W5N1 156 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 MORN2Q502X0 79 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 LY6G6FQ5SQ64 297 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 MOB3BQ86TA1 216 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 YPEL2Q96QA6 119 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 ABHD14AQ9BUJ0 271 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 C12orf4Q9NQ89 552 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 AK3Q9UIJ7 227 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 RAB22AQ9UL26 194 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 MGAT4AQ9UM21 535 aa12.92□□□□□ -0.34
TRIM28-206ENST00000595974 FGF16O43320 207 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 TSPAN15O95858 294 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 CSF1P09603 554 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 PPP1CCP36873 323 aaKnown RBP12.91□□□□□ -0.34
TRIM28-206ENST00000595974 ZNF134P52741 427 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 GNMTQ14749 295 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 Q6ZPA2 131 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 TGIF2LXQ8IUE1 241 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 C11orf44Q8N8P7 122 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 OR52L2PQ8NGH6 319 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 ARHGAP5-AS1Q96IT6 56 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 TXNL4BQ9NX01 149 aaKnown RBP12.91□□□□□ -0.34
TRIM28-206ENST00000595974 SSR3Q9UNL2 185 aa12.91□□□□□ -0.34
TRIM28-206ENST00000595974 LANCL1O43813 399 aa12.9□□□□□ -0.34
TRIM28-206ENST00000595974 RAB6AP20340 208 aa12.9□□□□□ -0.34
TRIM28-206ENST00000595974 CD1BP29016 333 aa12.9□□□□□ -0.34
TRIM28-206ENST00000595974 TMEM50BP56557 158 aa12.9□□□□□ -0.34
TRIM28-206ENST00000595974 HLA-DRB3P79483 266 aa12.9□□□□□ -0.34
TRIM28-206ENST00000595974 LYG1Q8N1E2 194 aa12.9□□□□□ -0.34
TRIM28-206ENST00000595974 C5orf56Q8N8D9 126 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms