RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 ZFP92A6NM28 416 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 H3BP45 60 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 P04436 131 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 SERF2P84101 59 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 TMEM267Q0VDI3 215 aaPredicted RBP12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 TCEAL6Q6IPX3 200 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 ZNF880Q6PDB4 577 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 Q6ZRM9 215 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 LINC00596Q86U02 117 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 ZDHHC23Q8IYP9 409 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 PARD6GQ9BYG4 376 aaPredicted RBP12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 CTDSP1Q9GZU7 261 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 OR51B6Q9H340 312 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 VSIRQ9H7M9 311 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 RYDENQ9NUL5 291 aaKnown RBP12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 PRUNE2Q8WUY3 3088 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 C9J4A7 227 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 HLA-HP01893 362 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 OPN1MWP04001 364 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 SERPINE2P07093 398 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 RFPL3SP0C7P2 107 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 OPN1MW2P0DN77 364 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 OPN1MW3P0DN78 364 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 PMS2P11Q13670 270 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 C20orf204Q6ZNR8 217 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 ZNF525Q8N782 197 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 OR14J1Q9UGF5 321 aa12.66□□□□□ -0.38
SMARCA4-219ENST00000592604 HSPB6O14558 160 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 PSG2P11465 335 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 MRPL37Q9BZE1 423 aaKnown RBP12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 PLK3Q9H4B4 646 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 CDH20Q9HBT6 801 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 MRPS18CQ9Y3D5 142 aaKnown RBP12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 LRRC3CA6NJW4 275 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 K7ESF4 209 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 SYNGR2O43760 224 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 SMPD2O60906 423 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 LRRC75BQ2VPJ9 315 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 PDZD11Q5EBL8 140 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 LCN15Q6UWW0 184 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 MRGPRGQ86SM5 289 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 ABHD3Q8WU67 409 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 CLDN23Q96B33 292 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 CABLES2Q9BTV7 478 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 VAX2Q9UIW0 290 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 ZNF407Q9C0G0 2248 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 WDR87Q6ZQQ6 2873 aa12.65□□□□□ -0.38
SMARCA4-219ENST00000592604 FABP4P15090 132 aa12.65□□□□□ -0.39
SMARCA4-219ENST00000592604 ARL16Q0P5N6 197 aa12.65□□□□□ -0.39
SMARCA4-219ENST00000592604 CLN3Q13286 438 aa12.65□□□□□ -0.39
SMARCA4-219ENST00000592604 GAMTQ14353 236 aa12.65□□□□□ -0.39
SMARCA4-219ENST00000592604 WIPI1Q5MNZ9 446 aaPredicted RBP12.65□□□□□ -0.39
SMARCA4-219ENST00000592604 SSX7Q7RTT5 188 aa12.65□□□□□ -0.39
SMARCA4-219ENST00000592604 REC114Q7Z4M0 266 aa12.65□□□□□ -0.39
SMARCA4-219ENST00000592604 OR5A2Q8NGI9 324 aa12.65□□□□□ -0.39
SMARCA4-219ENST00000592604 PRDM6Q9NQX0 595 aa12.65□□□□□ -0.39
SMARCA4-219ENST00000592604 ERRFI1Q9UJM3 462 aaPredicted RBP12.65□□□□□ -0.39
SMARCA4-219ENST00000592604 LRP5LA4QPB2 252 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 IGKV1-39P01597 117 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 IGKV1D-39P04432 117 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 MDH2P40926 338 aaKnown RBP12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 PKIAP61925 76 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 SLC23A3Q6PIS1 610 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 OR51H1Q8NH63 302 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 LRFN1Q9P244 771 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 PITPNC1Q9UKF7 332 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 SS18L1O75177 396 aaPredicted RBP12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 PGA5P0DJD9 388 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 WDR25Q64LD2 544 aaPredicted RBP12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 MRPL21Q7Z2W9 205 aaKnown RBP12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 HAPLN4Q86UW8 402 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 ZNF845Q96IR2 970 aaPredicted RBP12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 LINC00470Q9BZP3 86 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 PSENENQ9NZ42 101 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 CACNG5Q9UF02 275 aa12.64□□□□□ -0.39
SMARCA4-219ENST00000592604 NPIPB11E5RHQ5 1161 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 SYNGR1O43759 233 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 IFNA10P01566 189 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 ARF1P84077 181 aaKnown RBP12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 IZUMO4Q1ZYL8 232 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 TMEM95Q3KNT9 176 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 APOBEC3DQ96AK3 386 aaPredicted RBP12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 PINX1Q96BK5 328 aaKnown RBP12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 TRAV24A0A0B4J272 114 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 IGHV3-9P01782 118 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 FGF8P55075 233 aaPredicted RBP12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 HBG1P69891 147 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 HBG2P69892 147 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 USF2Q15853 346 aaPredicted RBP12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 TMEM41BQ5BJD5 291 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 OR10V1Q8NGI7 309 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 PSMF1Q92530 271 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 S100PBPQ96BU1 408 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 PACRGQ96M98 296 aaPredicted RBP12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 HIST1H2BLQ99880 126 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 PYGO2Q9BRQ0 406 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 AGMATQ9BSE5 352 aa12.63□□□□□ -0.39
SMARCA4-219ENST00000592604 IGKV3D-15A0A087WSY6 115 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 TRAPPC6AO75865 159 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms