RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 OR5H2Q8NGV7 314 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 IL1F10Q8WWZ1 152 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 ZNF714Q96N38 554 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 FOXC2Q99958 501 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 DCTN5Q9BTE1 182 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 GAL3ST2Q9H3Q3 398 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 TAF9BQ9HBM6 251 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 LPAR2Q9HBW0 351 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 Q9N2K0 584 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 RAB9BQ9NP90 201 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 C19orf12Q9NSK7 152 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 MCUBQ9NWR8 336 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 KLK11Q9UBX7 282 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 MTFP1Q9UDX5 166 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 ANXA10Q9UJ72 324 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 MGAT4AQ9UM21 535 aa4.38□□□□□ -1.71
LIG3-210ENST00000588109 UBE2J1Q9Y385 318 aaPredicted RBP4.38□□□□□ -1.71
LIG3-210ENST00000588109 TRBV6-6A0A0A6YYG2 114 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 PPIAL4CA0A0B4J2A2 164 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 hCG_1809904A0A1W2PP81 198 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 A0A1W2PPE2 198 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 A0A1W2PR64 198 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 A0A1W2PRV1 198 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 C12orf77C9JDV5 145 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 BET1O15155 118 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 FABP7O15540 132 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 HSPA12AO43301 675 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 LANCL1O43813 399 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 TOX4O94842 621 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 RAB3DO95716 219 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 PMP2P02689 132 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 CD3DP04234 171 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 IFNA6P05013 189 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 LIPFP07098 398 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 SCTP09683 121 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 CTXN2P0C2S0 81 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 GSTT2P0CG29 244 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 AKAIN1P0CW23 69 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 PPIAL4GP0DN37 164 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 GZMHP20718 246 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 SSTR5P35346 364 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 HRH1P35367 487 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 LMO4P61968 165 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 TSPAN5P62079 268 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 LCN2P80188 198 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 PAX5Q02548 391 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 DCTN2Q13561 401 aaKnown RBP4.37□□□□□ -1.71
LIG3-210ENST00000588109 ZNF273Q14593 569 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 MEF2DQ14814 521 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 CDK10Q15131 360 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 SRSF7Q16629 238 aaKnown RBP eCLIP4.37□□□□□ -1.71
LIG3-210ENST00000588109 LTC4SQ16873 150 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 GAGE13Q4V321 117 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 RNASE10Q5GAN6 216 aaKnown RBP4.37□□□□□ -1.71
LIG3-210ENST00000588109 STEAP1BQ6NZ63 245 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 ZNF841Q6ZN19 808 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 GAPTQ8N292 157 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 TMEM229BQ8NBD8 167 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 OR5AP2Q8NGF4 316 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 OR4A4PQ8NGN8 299 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 RFESDQ8TAC1 157 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 UBALD1Q8TB05 177 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 ARL11Q969Q4 196 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 GALMQ96C23 342 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 SDHCQ99643 169 aaPredicted RBP4.37□□□□□ -1.71
LIG3-210ENST00000588109 GINS4Q9BRT9 223 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 REG4Q9BYZ8 158 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 NCOR1P1Q9H4R4 102 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 PALMDQ9NP74 551 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 NECAP2Q9NVZ3 263 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 CALYQ9NYX4 217 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 EHFQ9NZC4 300 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 ONECUT1Q9UBC0 465 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 RPUSD1Q9UJJ7 312 aaKnown RBP4.37□□□□□ -1.71
LIG3-210ENST00000588109 RBMX2Q9Y388 322 aaKnown RBP4.37□□□□□ -1.71
LIG3-210ENST00000588109 LINC00312Q9Y6C7 94 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 FBN2P35556 2912 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 ANKRD17O75179 2603 aaKnown RBP4.37□□□□□ -1.71
LIG3-210ENST00000588109 HECTD1Q9ULT8 2610 aa4.37□□□□□ -1.71
LIG3-210ENST00000588109 SPG11Q96JI7 2443 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 CELSR2Q9HCU4 2923 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 ABCA12Q86UK0 2595 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 CENPEQ02224 2701 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 ARID1AO14497 2285 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 IGKV1D-8A0A087WSZ0 117 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 KBTBD11-OT1A0A1B0GTJ5 212 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 ANKRD20A5PA0PJZ0 165 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 ZNF729A6NN14 1252 aaPredicted RBP4.36□□□□□ -1.71
LIG3-210ENST00000588109 DISC1C4P0D8 188 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 FAM157AC9JC47 383 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 M0QYG6 137 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 SDCBPO00560 298 aaPredicted RBP4.36□□□□□ -1.71
LIG3-210ENST00000588109 ENSAO43768 121 aaKnown RBP4.36□□□□□ -1.71
LIG3-210ENST00000588109 FCN3O75636 299 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 HBZP02008 142 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 ZNF728P0DKX0 622 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 VSIG10L2P0DP72 767 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 CCL3L1P16619 93 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 TBPP20226 339 aa4.36□□□□□ -1.71
LIG3-210ENST00000588109 OMGP23515 440 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms