RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 IGKV1-33P01594 117 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 LOXL3P58215 753 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 MLLT11Q13015 90 aaPredicted RBP9.87□□□□□ -0.83
SS18-225ENST00000585121 TPBGQ13641 420 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 DIAPH2-AS1Q14236 149 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 HNF4GQ14541 408 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 PDLIM3Q53GG5 364 aaPredicted RBP9.87□□□□□ -0.83
SS18-225ENST00000585121 ZNF554Q86TJ5 538 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 GAPTQ8N292 157 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 OR6M1Q8NGM8 313 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 WIPF2Q8TF74 440 aaPredicted RBP9.87□□□□□ -0.83
SS18-225ENST00000585121 PLGRKTQ9HBL7 147 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 TAF9BQ9HBM6 251 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 IGHV1-3A0A0C4DH29 117 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 TCRBV4S1A1TA0A5B7 111 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 FGF16O43320 207 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 TXNL1O43396 289 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 BPNT1O95861 308 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 VSIG8P0DPA2 414 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 RCC1P18754 421 aaPredicted RBP9.86□□□□□ -0.83
SS18-225ENST00000585121 MAP2K4P45985 399 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 REG1BP48304 166 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 GP2P55259 537 aaKnown RBP9.86□□□□□ -0.83
SS18-225ENST00000585121 RPS27AP62979 156 aaKnown RBP9.86□□□□□ -0.83
SS18-225ENST00000585121 SIGIRRQ6IA17 410 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 SLC25A48Q6ZT89 311 aaKnown RBP9.86□□□□□ -0.83
SS18-225ENST00000585121 OR10V1Q8NGI7 309 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 OR2T10Q8NGZ9 312 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 OR1L1Q8NH94 360 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 MGLLQ99685 303 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 URM1Q9BTM9 101 aaKnown RBP9.86□□□□□ -0.83
SS18-225ENST00000585121 RBM38Q9H0Z9 239 aaKnown RBP9.86□□□□□ -0.83
SS18-225ENST00000585121 OR2S2Q9NQN1 319 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 ABRACLQ9P1F3 81 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 CEPT1Q9Y6K0 416 aa9.86□□□□□ -0.83
SS18-225ENST00000585121 SH2D7A6NKC9 451 aaPredicted RBP9.85□□□□□ -0.83
SS18-225ENST00000585121 NCBP2LA6PVI3 153 aaKnown RBP9.85□□□□□ -0.83
SS18-225ENST00000585121 SLC22A1O15245 554 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 RGS11O94810 467 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 AMY1AP04745 511 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 AMY2AP04746 511 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 ARSBP15848 533 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 CPEP16870 476 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 PSMD7P51665 324 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 RPS25P62851 125 aaKnown RBP9.85□□□□□ -0.83
SS18-225ENST00000585121 CD83Q01151 205 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 FBLN7Q53RD9 439 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 FOXB2Q5VYV0 432 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 STEAP3Q658P3 488 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 OR10K2Q6IF99 312 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 ZNF367Q7RTV3 350 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 TGIF2LXQ8IUE1 241 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 RTN4IP1Q8WWV3 396 aaPredicted RBP9.85□□□□□ -0.83
SS18-225ENST00000585121 CHMP1AQ9HD42 196 aaPredicted RBP9.85□□□□□ -0.83
SS18-225ENST00000585121 MBNL3Q9NUK0 354 aaKnown RBP9.85□□□□□ -0.83
SS18-225ENST00000585121 PLEKHJ1Q9NW61 149 aa9.85□□□□□ -0.83
SS18-225ENST00000585121 TSSC4Q9Y5U2 329 aaPredicted RBP9.85□□□□□ -0.83
SS18-225ENST00000585121 IGHV3-72A0A0B4J1Y9 119 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 A0A1W2PRX2 142 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 PF4V1P10720 104 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 CHATP28329 748 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 CD1BP29016 333 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 BLVRBP30043 206 aaPredicted RBP9.84□□□□□ -0.83
SS18-225ENST00000585121 TMBIM6P55061 237 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 EBI3Q14213 229 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 RAB11BQ15907 218 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 KHDC1LQ5JSQ8 128 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 C1QL4Q86Z23 238 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 IZUMO1Q8IYV9 350 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 C5orf56Q8N8D9 126 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 MRPL30Q8TCC3 161 aaKnown RBP9.84□□□□□ -0.83
SS18-225ENST00000585121 CHPT1Q8WUD6 406 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 GALMQ96C23 342 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 FAAP24Q9BTP7 215 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 TM2D1Q9BX74 207 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 RSL24D1Q9UHA3 163 aaKnown RBP9.84□□□□□ -0.83
SS18-225ENST00000585121 JPT1Q9UK76 154 aa9.84□□□□□ -0.83
SS18-225ENST00000585121 PSMB11A5LHX3 300 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 SERPINE3A8MV23 424 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 TMEM14DPA8MWL7 114 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 SLC17A2O00624 439 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 MOSP00540 346 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 CD37P11049 281 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 CALRP27797 417 aaKnown RBP9.83□□□□□ -0.84
SS18-225ENST00000585121 HTD2P86397 168 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 P2RY14Q15391 338 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 CT45A1Q5HYN5 189 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 TMEM91Q6ZNR0 172 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 OR2W3Q7Z3T1 314 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 C6orf201Q7Z4U5 140 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 SLC35E3Q7Z769 313 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 ANKRD13BQ86YJ7 626 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 CLVS1Q8IUQ0 354 aaPredicted RBP9.83□□□□□ -0.84
SS18-225ENST00000585121 FOXRED2Q8IWF2 684 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 ZNF439Q8NDP4 499 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 OR8H1Q8NGG4 311 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 CT45A3Q8NHU0 189 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 SETD6Q8TBK2 473 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 ST6GALNAC6Q969X2 333 aa9.83□□□□□ -0.84
SS18-225ENST00000585121 EAF1Q96JC9 268 aaPredicted RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms