RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 RDH8Q9NYR8 311 aa20.66■□□□□ 0.9
SHMT1-207ENST00000580002 RPUSD1Q9UJJ7 312 aaKnown RBP20.66■□□□□ 0.9
SHMT1-207ENST00000580002 NUBP2Q9Y5Y2 271 aa20.66■□□□□ 0.9
SHMT1-207ENST00000580002 KIAA1324LA8MWY0 1029 aaPredicted RBP20.65■□□□□ 0.9
SHMT1-207ENST00000580002 SPINT2O43291 252 aa20.65■□□□□ 0.9
SHMT1-207ENST00000580002 HSPA12AO43301 675 aa20.65■□□□□ 0.9
SHMT1-207ENST00000580002 TUSC2O75896 110 aa20.65■□□□□ 0.9
SHMT1-207ENST00000580002 PPYP01298 95 aa20.65■□□□□ 0.9
SHMT1-207ENST00000580002 H2AFB2P0C5Z0 115 aa20.65■□□□□ 0.9
SHMT1-207ENST00000580002 TMEM17Q86X19 198 aa20.65■□□□□ 0.9
SHMT1-207ENST00000580002 C11orf42Q8N5U0 333 aa20.65■□□□□ 0.9
SHMT1-207ENST00000580002 MINDY2Q8NBR6 621 aa20.65■□□□□ 0.9
SHMT1-207ENST00000580002 INMT-MINDY4F8WBC2 141 aa20.64■□□□□ 0.9
SHMT1-207ENST00000580002 CTXN2P0C2S0 81 aa20.64■□□□□ 0.9
SHMT1-207ENST00000580002 LCN2P80188 198 aa20.64■□□□□ 0.9
SHMT1-207ENST00000580002 ADAD2Q8NCV1 583 aaKnown RBP20.64■□□□□ 0.9
SHMT1-207ENST00000580002 UBE2J1Q9Y385 318 aaPredicted RBP20.64■□□□□ 0.9
SHMT1-207ENST00000580002 ZNF729A6NN14 1252 aaPredicted RBP20.64■□□□□ 0.89
SHMT1-207ENST00000580002 FAM157AC9JC47 383 aa20.64■□□□□ 0.89
SHMT1-207ENST00000580002 NDUFS8O00217 210 aa20.64■□□□□ 0.89
SHMT1-207ENST00000580002 F2RL2O00254 374 aa20.64■□□□□ 0.89
SHMT1-207ENST00000580002 RLN1P04808 185 aa20.64■□□□□ 0.89
SHMT1-207ENST00000580002 VSIG10L2P0DP72 767 aa20.64■□□□□ 0.89
SHMT1-207ENST00000580002 ESCO2Q56NI9 601 aa20.64■□□□□ 0.89
SHMT1-207ENST00000580002 ZNF714Q96N38 554 aa20.64■□□□□ 0.89
SHMT1-207ENST00000580002 ZNF69Q9UC07 566 aa20.64■□□□□ 0.89
SHMT1-207ENST00000580002 PPIAL4CA0A0B4J2A2 164 aa20.63■□□□□ 0.89
SHMT1-207ENST00000580002 PPIAL4GP0DN37 164 aa20.63■□□□□ 0.89
SHMT1-207ENST00000580002 NFYBP25208 207 aa20.63■□□□□ 0.89
SHMT1-207ENST00000580002 TRAT1Q6PIZ9 186 aa20.63■□□□□ 0.89
SHMT1-207ENST00000580002 CAPSLQ8WWF8 208 aa20.63■□□□□ 0.89
SHMT1-207ENST00000580002 MOB3AQ96BX8 217 aa20.63■□□□□ 0.89
SHMT1-207ENST00000580002 GPR132Q9UNW8 380 aa20.63■□□□□ 0.89
SHMT1-207ENST00000580002 ZNF728P0DKX0 622 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 ZBTB25P24278 435 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 TMED4Q7Z7H5 227 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 ZNF554Q86TJ5 538 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 KRTAP1-3Q8IUG1 177 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 LY6G5BQ8NDX9 201 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 GPHA2Q96T91 129 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 RTBDNQ9BSG5 229 aaPredicted RBP20.62■□□□□ 0.89
SHMT1-207ENST00000580002 C5orf66Q9H5L9 145 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 LINC00574Q9H8X3 128 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 LPAR2Q9HBW0 351 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 TAS2R3Q9NYW6 316 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 IDI2-AS1Q9NZ38 188 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 COPZ2Q9P299 210 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 OPN4Q9UHM6 478 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 RNF150Q9ULK6 438 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 SVEP1Q4LDE5 3571 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 LOC105371242A0A075B767 164 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 A0A1W2PPE3 182 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 FPR2P25090 351 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 ZNF134P52741 427 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 HTD2P86397 168 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 SLC25A21Q9BQT8 299 aaPredicted RBP20.62■□□□□ 0.89
SHMT1-207ENST00000580002 MMP26Q9NRE1 261 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 ZNRD1Q9P1U0 126 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 OR2W1Q9Y3N9 320 aa20.62■□□□□ 0.89
SHMT1-207ENST00000580002 ABCA2Q9BZC7 2435 aa20.61■□□□□ 0.89
SHMT1-207ENST00000580002 TRBV23-1A0A0A0MS06 115 aa20.61■□□□□ 0.89
SHMT1-207ENST00000580002 SLC31A2O15432 143 aa20.61■□□□□ 0.89
SHMT1-207ENST00000580002 PGAM2P15259 253 aa20.61■□□□□ 0.89
SHMT1-207ENST00000580002 MORN2Q502X0 79 aa20.61■□□□□ 0.89
SHMT1-207ENST00000580002 C8orf46Q8TAG6 207 aa20.61■□□□□ 0.89
SHMT1-207ENST00000580002 SECTM1Q8WVN6 248 aa20.61■□□□□ 0.89
SHMT1-207ENST00000580002 GNG12Q9UBI6 72 aa20.61■□□□□ 0.89
SHMT1-207ENST00000580002 ZNF221Q9UK13 617 aa20.61■□□□□ 0.89
SHMT1-207ENST00000580002 PRRC2AP48634 2157 aaKnown RBP20.61■□□□□ 0.89
SHMT1-207ENST00000580002 OR8U9P0C7N5 309 aa20.6■□□□□ 0.89
SHMT1-207ENST00000580002 MAPK1IP1LQ8NDC0 245 aa20.6■□□□□ 0.89
SHMT1-207ENST00000580002 OR8U1Q8NH10 309 aa20.6■□□□□ 0.89
SHMT1-207ENST00000580002 MBD6Q96DN6 1003 aa20.6■□□□□ 0.89
SHMT1-207ENST00000580002 CCL28Q9NRJ3 127 aa20.6■□□□□ 0.89
SHMT1-207ENST00000580002 GFOD1Q9NXC2 390 aa20.6■□□□□ 0.89
SHMT1-207ENST00000580002 GPR37O15354 613 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 GNRHRP30968 328 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 HERV-K104P61576 105 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 Q5PR19 223 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 OR52B4Q8NGK2 314 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 TMEM230Q96A57 120 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 SEC22CQ9BRL7 303 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 A0A096LNT2 108 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 DIRAS3O95661 229 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 DSCR9P59020 149 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 ARF6P62330 175 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 PAX2Q02962 417 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 LRRC75A-AS1Q8N1F1 130 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 GAL3ST2Q9H3Q3 398 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 LPAR3Q9UBY5 353 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 CCDC168Q8NDH2 2452 aa20.59■□□□□ 0.89
SHMT1-207ENST00000580002 HSD17B6O14756 317 aa20.58■□□□□ 0.89
SHMT1-207ENST00000580002 ST8SIA5O15466 376 aa20.58■□□□□ 0.89
SHMT1-207ENST00000580002 TATDN3Q17R31 274 aa20.58■□□□□ 0.89
SHMT1-207ENST00000580002 HEPN1Q6WQI6 88 aa20.58■□□□□ 0.89
SHMT1-207ENST00000580002 Q8N7P7 452 aa20.58■□□□□ 0.89
SHMT1-207ENST00000580002 ZDHHC22Q8N966 263 aa20.58■□□□□ 0.89
SHMT1-207ENST00000580002 C5orf30Q96GV9 206 aa20.58■□□□□ 0.89
SHMT1-207ENST00000580002 SUCNR1Q9BXA5 334 aa20.58■□□□□ 0.89
SHMT1-207ENST00000580002 SLC5A7Q9GZV3 580 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms