RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 PNLIPRP3Q17RR3 467 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 CXorf66Q5JRM2 361 aaPredicted RBP10.78□□□□□ -0.68
CCDC40-216ENST00000576241 UNQ9370/PRO34162Q6UXP9 181 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 C18orf65Q6ZTR6 163 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 AHSA2Q719I0 299 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 ZNF439Q8NDP4 499 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 TFAP2CQ92754 450 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 S1PR3Q99500 378 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 UQCC2Q9BRT2 126 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 KCNIP1Q9NZI2 227 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 ZMAT5Q9UDW3 170 aaKnown RBP10.78□□□□□ -0.68
CCDC40-216ENST00000576241 PSORS1C1Q9UIG5 152 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 WI2-2373I1.2A0A1W2PRP0 233 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 UBE2QL1A1L167 161 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 LINC01548A6NM66 108 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 PDCD6O75340 191 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 SC5DO75845 299 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 CD1AP06126 327 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 RCC1P18754 421 aaPredicted RBP10.77□□□□□ -0.69
CCDC40-216ENST00000576241 RAB25P57735 213 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 GPR50Q13585 617 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 CT45A1Q5HYN5 189 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 STEAP3Q658P3 488 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 GAPTQ8N292 157 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 OR1L1Q8NH94 360 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 CT45A3Q8NHU0 189 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 Q96M66 194 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 P2RX4Q99571 388 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 CST11Q9H112 138 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 TAF9BQ9HBM6 251 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 OR2S2Q9NQN1 319 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 GHRLQ9UBU3 117 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 ERGIC3Q9Y282 383 aa10.77□□□□□ -0.69
CCDC40-216ENST00000576241 ZNF736B4DX44 427 aaPredicted RBP10.76□□□□□ -0.69
CCDC40-216ENST00000576241 CCL24O00175 119 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 LANCL1O43813 399 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 RPLP1P05386 114 aaKnown RBP10.76□□□□□ -0.69
CCDC40-216ENST00000576241 GNAO1P09471 354 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 VDAC1P21796 283 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 SOX6P35712 828 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 GP2P55259 537 aaKnown RBP10.76□□□□□ -0.69
CCDC40-216ENST00000576241 FOXE3Q13461 319 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 DCTN2Q13561 401 aaKnown RBP10.76□□□□□ -0.69
CCDC40-216ENST00000576241 ZNF554Q86TJ5 538 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 BPIFB6Q8NFQ5 453 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 OR8U1Q8NH10 309 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 FAM46BQ96A09 425 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 DUX3Q96PT4 197 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 VCXQ9H320 206 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 PLSCR3Q9NRY6 295 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 PLCXD1Q9NUJ7 323 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 JPT1Q9UK76 154 aa10.76□□□□□ -0.69
CCDC40-216ENST00000576241 SACSQ9NZJ4 4579 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 ELANEP08246 267 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 UBBP0CG47 229 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 OR5H8P0DN80 308 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 VHLP40337 213 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 ZNF134P52741 427 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 LSAMPQ13449 338 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 MMDQ15546 238 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 NKAPLQ5M9Q1 402 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 LYPD6Q86Y78 171 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 FAM71E2Q8N5Q1 922 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 NANOGP1Q8N7R0 232 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 RAX2Q96IS3 184 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 NEDD4LQ96PU5 975 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 HSPB9Q9BQS6 159 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 ABHD14AQ9BUJ0 271 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 DCLRE1BQ9H816 532 aa10.75□□□□□ -0.69
CCDC40-216ENST00000576241 MBNL3Q9NUK0 354 aaKnown RBP10.75□□□□□ -0.69
CCDC40-216ENST00000576241 ZNF107Q9UII5 783 aaPredicted RBP10.75□□□□□ -0.69
CCDC40-216ENST00000576241 H0YHG0 523 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 RGS11O94810 467 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 MYF6P23409 242 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 PPP1CCP36873 323 aaKnown RBP10.74□□□□□ -0.69
CCDC40-216ENST00000576241 CDX1P47902 265 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-216ENST00000576241 F2RL1P55085 397 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 DGCR2P98153 550 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 GABPB1Q06547 395 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-216ENST00000576241 CD69Q07108 199 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 GNMTQ14749 295 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 MORN2Q502X0 79 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 SIGIRRQ6IA17 410 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 LAIR2Q6ISS4 152 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 MS4A15Q8N5U1 240 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 OR52L2PQ8NGH6 319 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 OR5M8Q8NGP6 311 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 MRPL30Q8TCC3 161 aaKnown RBP10.74□□□□□ -0.69
CCDC40-216ENST00000576241 FBLIM1Q8WUP2 373 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 GALMQ96C23 342 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 MND1Q9BWT6 205 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 ABRACLQ9P1F3 81 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 LRRC42Q9Y546 428 aa10.74□□□□□ -0.69
CCDC40-216ENST00000576241 IGHG4P01861 327 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 IGF1P05019 195 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 SLC2A2P11168 524 aaPredicted RBP10.73□□□□□ -0.69
CCDC40-216ENST00000576241 HTD2P86397 168 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 KIR2DS1Q14954 304 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 DEFB136Q30KP8 78 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 ACSM3Q53FZ2 586 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms