RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ORAI1Q96D31 301 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 ANKRD60Q9BZ19 345 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 CHCHD3Q9NX63 227 aaKnown RBP16.45■□□□□ 0.22
VPS53-216ENST00000574029 BABAM2Q9NXR7 383 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 RCC2Q9P258 522 aaKnown RBP16.45■□□□□ 0.22
VPS53-216ENST00000574029 CLEC2DQ9UHP7 191 aa16.45■□□□□ 0.22
VPS53-216ENST00000574029 IGFBP3P17936 291 aaPredicted RBP16.44■□□□□ 0.22
VPS53-216ENST00000574029 SLC22A6Q4U2R8 563 aa16.44■□□□□ 0.22
VPS53-216ENST00000574029 CT45A1Q5HYN5 189 aa16.44■□□□□ 0.22
VPS53-216ENST00000574029 SYT6Q5T7P8 510 aaPredicted RBP16.44■□□□□ 0.22
VPS53-216ENST00000574029 OR2G6Q5TZ20 316 aa16.44■□□□□ 0.22
VPS53-216ENST00000574029 ZNF485Q8NCK3 441 aa16.44■□□□□ 0.22
VPS53-216ENST00000574029 CT45A3Q8NHU0 189 aa16.44■□□□□ 0.22
VPS53-216ENST00000574029 RBMXL1Q96E39 390 aaKnown RBP16.44■□□□□ 0.22
VPS53-216ENST00000574029 KCTD7Q96MP8 289 aa16.44■□□□□ 0.22
VPS53-216ENST00000574029 ZNF184Q99676 751 aaPredicted RBP16.44■□□□□ 0.22
VPS53-216ENST00000574029 SPACA1Q9HBV2 294 aa16.44■□□□□ 0.22
VPS53-216ENST00000574029 RAB9BQ9NP90 201 aa16.44■□□□□ 0.22
VPS53-216ENST00000574029 OGG1O15527 345 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 SPINT2O43291 252 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 GPX5O75715 221 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 GPR176Q14439 515 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 RNLSQ5VYX0 342 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 IZUMO2Q6UXV1 221 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 GAPTQ8N292 157 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 OR11H1Q8NG94 326 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 SMIM19Q96E16 107 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 CHCHD6Q9BRQ6 235 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 GNG12Q9UBI6 72 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 ZNF107Q9UII5 783 aaPredicted RBP16.43■□□□□ 0.22
VPS53-216ENST00000574029 TRAPPC2LQ9UL33 140 aa16.43■□□□□ 0.22
VPS53-216ENST00000574029 ZNF256Q9Y2P7 627 aaPredicted RBP16.43■□□□□ 0.22
VPS53-216ENST00000574029 TRBV5-5A0A0J9YX44 114 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 MCRIP1C9JLW8 97 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 LANCL1O43813 399 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 OR5H8P0DN80 308 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 PPIFP30405 207 aaKnown RBP16.42■□□□□ 0.22
VPS53-216ENST00000574029 ZNF260Q3ZCT1 412 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 C6orf183Q5T699 404 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 STEAP3Q658P3 488 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 AHSA2Q719I0 299 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 OR10V1Q8NGI7 309 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 OR13C5Q8NGS8 318 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 OR4K15Q8NH41 348 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 MRPS24Q96EL2 167 aaKnown RBP16.42■□□□□ 0.22
VPS53-216ENST00000574029 UBE2E2Q96LR5 201 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 ASCL2Q99929 193 aa16.42■□□□□ 0.22
VPS53-216ENST00000574029 MAGEA13PA6NCF6 341 aa16.41■□□□□ 0.22
VPS53-216ENST00000574029 HBZP02008 142 aa16.41■□□□□ 0.22
VPS53-216ENST00000574029 CHATP28329 748 aa16.41■□□□□ 0.22
VPS53-216ENST00000574029 LSAMPQ13449 338 aa16.41■□□□□ 0.22
VPS53-216ENST00000574029 KIAA0141Q14154 515 aaPredicted RBP16.41■□□□□ 0.22
VPS53-216ENST00000574029 OR1L1Q8NH94 360 aa16.41■□□□□ 0.22
VPS53-216ENST00000574029 ETAA1Q9NY74 926 aa16.41■□□□□ 0.22
VPS53-216ENST00000574029 RRP15Q9Y3B9 282 aaKnown RBP16.41■□□□□ 0.22
VPS53-216ENST00000574029 C3orf84H3BNL1 204 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 LALBAP00709 142 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 CDK1P06493 297 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 INSL3P51460 131 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 RUNX1Q01196 453 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 ASPHD1Q5U4P2 390 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 RAB12Q6IQ22 244 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 TRAT1Q6PIZ9 186 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 NANOGP1Q8N7R0 232 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 ZNF491Q8N8L2 437 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 GHSRQ92847 366 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 KLK15Q9H2R5 256 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 SCN3BQ9NY72 215 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 RAB26Q9ULW5 256 aa16.4■□□□□ 0.22
VPS53-216ENST00000574029 TRAV8-7A0A075B6U6 113 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 I3L521 148 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 SC5DO75845 299 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 IGLV1-40P01703 118 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 OR8U8P0C7N1 319 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 SLC2A2P11168 524 aaPredicted RBP16.39■□□□□ 0.21
VPS53-216ENST00000574029 RCC1P18754 421 aaPredicted RBP16.39■□□□□ 0.21
VPS53-216ENST00000574029 RPS11P62280 158 aaKnown RBP eCLIP16.39■□□□□ 0.21
VPS53-216ENST00000574029 MMDQ15546 238 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 Q499Y3 187 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 MORN2Q502X0 79 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 DMKNQ6E0U4 476 aaPredicted RBP16.39■□□□□ 0.21
VPS53-216ENST00000574029 PRR18Q8N4B5 295 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 OR1N2Q8NGR9 330 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 MUL1Q969V5 352 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 DUSP21Q9H596 190 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 GNB4Q9HAV0 340 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 CKLFQ9UBR5 152 aa16.39■□□□□ 0.21
VPS53-216ENST00000574029 MRPS28Q9Y2Q9 187 aaKnown RBP16.39■□□□□ 0.21
VPS53-216ENST00000574029 FAM90A10PA6NDY2 464 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 FAM90A7PA6NKC0 464 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 FAM90A23PA8MXZ1 464 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 PTGES3LE9PB15 166 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 CA11O75493 328 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 FSTP19883 344 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 YIF1BQ5BJH7 314 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 TMEM65Q6PI78 240 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 GLIPR1L1Q6UWM5 242 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 TAF9BQ9HBM6 251 aa16.38■□□□□ 0.21
VPS53-216ENST00000574029 MBNL3Q9NUK0 354 aaKnown RBP16.38■□□□□ 0.21
VPS53-216ENST00000574029 VSIG4Q9Y279 399 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms