RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 KBTBD8Q8NFY9 601 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 OR6Q1Q8NGQ2 317 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 OR51A7Q8NH64 312 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 SLC7A13Q8TCU3 470 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 TMEM54Q969K7 222 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 CEP19Q96LK0 163 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 PACRGQ96M98 296 aaPredicted RBP4.95□□□□□ -1.62
VPS53-212ENST00000572259 WACQ9BTA9 647 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 THTPAQ9BU02 230 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 CBLN4Q9NTU7 201 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 PAK1IP1Q9NWT1 392 aaPredicted RBP4.95□□□□□ -1.62
VPS53-212ENST00000572259 CLN6Q9NWW5 311 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 TAS2R1Q9NYW7 299 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 ZNF224Q9NZL3 707 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 EIF3KQ9UBQ5 218 aaKnown RBP4.95□□□□□ -1.62
VPS53-212ENST00000572259 CYB5R1Q9UHQ9 305 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 CHD3Q12873 2000 aaKnown RBP4.95□□□□□ -1.62
VPS53-212ENST00000572259 TLN2Q9Y4G6 2542 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 FLNAP21333 2647 aaKnown RBP4.94□□□□□ -1.62
VPS53-212ENST00000572259 AKAP9Q99996 3911 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 CELSR1Q9NYQ6 3014 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 MTORP42345 2549 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 TRAV27A0A087WT01 109 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 TRBV7-9A0A0J9YWB2 115 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 IQCMA0A1B0GVH7 501 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 A0A1W2PPR1 153 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 FAM231BA6NCW3 169 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 SHISA9B4DS77 424 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 SEC14L6B5MCN3 397 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 TNFRSF11BO00300 401 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 GNGT2O14610 69 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 ATP6V0E1O15342 81 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 GATCO43716 136 aaKnown RBP4.94□□□□□ -1.62
VPS53-212ENST00000572259 IDH3BO43837 385 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 IGKV3-15P01624 115 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 IGLV1-44P01699 117 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 IGHMP01871 453 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 HBE1P02100 147 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 CECR9P0C854 216 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 PGA4P0DJD7 388 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 PGA3P0DJD8 388 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 COX5BP10606 129 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 PAX1P15863 534 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 ZP3P21754 424 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 IDH3GP51553 393 aaPredicted RBP4.94□□□□□ -1.62
VPS53-212ENST00000572259 FUT6P51993 359 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 TAS2R60P59551 318 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 PCBD1P61457 104 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 RPS23P62266 143 aaKnown RBP4.94□□□□□ -1.62
VPS53-212ENST00000572259 ZNF85Q03923 595 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 OR5I1Q13606 314 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 TAL2Q16559 108 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 POU2AF1Q16633 256 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 HIST3H3Q16695 136 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 C10orf128Q5T292 105 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 PVRIGQ6DKI7 326 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 LCN8Q6JVE9 175 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 RPL13AP3Q6NVV1 102 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 DNM1P34Q6PK57 102 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 TBPL2Q6SJ96 375 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 MDP1Q86V88 176 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 HIPK1Q86Z02 1210 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 C1orf174Q8IYL3 243 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 BPIFB2Q8N4F0 458 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 ARIH2OSQ8N7S6 290 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 NEXN-AS1Q8NBZ9 246 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 OR4K5Q8NGD3 323 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 OR52L1Q8NGH7 329 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 GNPDA2Q8TDQ7 276 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 NOL4LQ96MY1 436 aaPredicted RBP4.94□□□□□ -1.62
VPS53-212ENST00000572259 CABLES2Q9BTV7 478 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 RBKSQ9H477 322 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 REEP1Q9H902 201 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 SIAEQ9HAT2 523 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 PLCXD1Q9NUJ7 323 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 TMEM38BQ9NVV0 291 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 KCNG2Q9UJ96 466 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 MOKQ9UQ07 419 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 C2CD3Q4AC94 2353 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 OTOGQ6ZRI0 2925 aa4.94□□□□□ -1.62
VPS53-212ENST00000572259 HIVEP2P31629 2446 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 IGHV1-18A0A0C4DH31 117 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 E7EQL1 145 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 ATP6V1G2-DDX39BF2Z307 99 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 K7EN84 100 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 PRKYO43930 277 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 RENP00797 406 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 SERPINA5P05154 406 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 SOD3P08294 240 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 T-ENOLP0DO92 83 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 G0S2P27469 103 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 CRABP1P29762 137 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 APLNRP35414 380 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 CDKN2AP42771 156 aaKnown RBP4.93□□□□□ -1.62
VPS53-212ENST00000572259 OMPP47874 163 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 TFPI2P48307 235 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 ALDH3B2P48448 385 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 PRKXP51817 358 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 ZNF133P52736 654 aaPredicted RBP4.93□□□□□ -1.62
VPS53-212ENST00000572259 DSCR9P59020 149 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms