RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 IGLV1-47P01700 117 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 RBP4P02753 201 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 PTHLHP12272 177 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 PPP1CCP36873 323 aaKnown RBP11.13□□□□□ -0.63
CLN3-235ENST00000568497 ZNF134P52741 427 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 VBP1P61758 197 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 HLA-DRB5Q30154 266 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 DHRS7BQ6IAN0 325 aaPredicted RBP11.13□□□□□ -0.63
CLN3-235ENST00000568497 FAM89BQ8N5H3 189 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 C11orf44Q8N8P7 122 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 MEGF9Q9H1U4 602 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 ATG5Q9H1Y0 275 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 GFOD1Q9NXC2 390 aa11.13□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A10PA6NDY2 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A18PA6NE21 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A16PA6NEW6 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A20PA6NIJ5 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A7PA6NKC0 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A22PA8MWA6 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A12PA8MX19 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A5PA8MXJ8 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A23PA8MXZ1 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 BUB1B-PAK6H3BSN5 160 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A15PP0C7V4 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A13PP0C7W8 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A14PP0C7W9 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 FAM90A24PP0C7X0 464 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 HTR1DP28221 377 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 RPS19P39019 145 aaKnown RBP11.12□□□□□ -0.63
CLN3-235ENST00000568497 KCNJ3P48549 501 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 SERPINB10P48595 397 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 TPTE2P1Q5T6R2 138 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 GDPGP1Q6ZNW5 385 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 GAPTQ8N292 157 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 IL1F10Q8WWZ1 152 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 CREB3L1Q96BA8 519 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 PHF21AQ96BD5 680 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 URM1Q9BTM9 101 aaKnown RBP11.12□□□□□ -0.63
CLN3-235ENST00000568497 KRTAP17-1Q9BYP8 105 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 SPACA1Q9HBV2 294 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 OR1A1Q9P1Q5 309 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 VPREB3Q9UKI3 123 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 RAB22AQ9UL26 194 aa11.12□□□□□ -0.63
CLN3-235ENST00000568497 IGKV1D-8A0A087WSZ0 117 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 ZNF736B4DX44 427 aaPredicted RBP11.11□□□□□ -0.63
CLN3-235ENST00000568497 LY6LH3BQJ8 138 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 RAB27BO00194 218 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 SCTP09683 121 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 GALP22466 123 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 CD34P28906 385 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 HNF4GQ14541 408 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 TMEM95Q3KNT9 176 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 DEFB121Q5J5C9 76 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 GPR107Q5VW38 600 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 SLC16A12Q6ZSM3 486 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 OR13F1Q8NGS4 319 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 OR9G1Q8NH87 305 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 MMP28Q9H239 520 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 DPAGT1Q9H3H5 408 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 VCX3AQ9NNX9 186 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 DPM3Q9P2X0 92 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 GNG12Q9UBI6 72 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 TBL2Q9Y4P3 447 aaKnown RBP11.11□□□□□ -0.63
CLN3-235ENST00000568497 COL7A1Q02388 2944 aa11.11□□□□□ -0.63
CLN3-235ENST00000568497 A6NDX4 124 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 F2RL2O00254 374 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 NAPSAO96009 420 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 TFAP2AP05549 437 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 PAX5Q02548 391 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 CD69Q07108 199 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 HERPUD1Q15011 391 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 CT45A1Q5HYN5 189 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 OR52W1Q6IF63 320 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 DRAM1Q8N682 238 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 OR10R2Q8NGX6 335 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 OR10X1Q8NGY0 326 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 OR56B4Q8NH76 319 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 CT45A3Q8NHU0 189 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 CAPSLQ8WWF8 208 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 SLC25A38Q96DW6 304 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 RAB3CQ96E17 227 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 MALSU1Q96EH3 234 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 CMSS1Q9BQ75 279 aaKnown RBP11.1□□□□□ -0.63
CLN3-235ENST00000568497 NCOR1P1Q9H4R4 102 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 LINC00574Q9H8X3 128 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 OR2S2Q9NQN1 319 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 ABCB10Q9NRK6 738 aa11.1□□□□□ -0.63
CLN3-235ENST00000568497 MBNL3Q9NUK0 354 aaKnown RBP11.1□□□□□ -0.63
CLN3-235ENST00000568497 A0A087X0M5 115 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 IGKV1-6A0A0C4DH72 117 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 A0A1B0GX30 115 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 BTBD17A6NE02 478 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 J3QRK9 145 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 MFNGO00587 321 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 ST8SIA5O15466 376 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 ORC5O43913 435 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 TSPAN9O75954 239 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 GZMHP20718 246 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 OR3A3P47888 321 aa11.09□□□□□ -0.63
CLN3-235ENST00000568497 PSMD7P51665 324 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms