RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 OR56B4Q8NH76 319 aa12□□□□□ -0.49
VPS39-210ENST00000568357 CT45A3Q8NHU0 189 aa12□□□□□ -0.49
VPS39-210ENST00000568357 OCSTAMPQ9BR26 566 aa12□□□□□ -0.49
VPS39-210ENST00000568357 SLC25A33Q9BSK2 321 aa12□□□□□ -0.49
VPS39-210ENST00000568357 GNG12Q9UBI6 72 aa12□□□□□ -0.49
VPS39-210ENST00000568357 SH2D7A6NKC9 451 aaPredicted RBP11.99□□□□□ -0.49
VPS39-210ENST00000568357 FOXI3A8MTJ6 420 aaPredicted RBP11.99□□□□□ -0.49
VPS39-210ENST00000568357 SNRNP70P08621 437 aaKnown RBP11.99□□□□□ -0.49
VPS39-210ENST00000568357 PSMB9P28065 219 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 REG1BP48304 166 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 RAB7AP51149 207 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 TMEM50BP56557 158 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 TMEM95Q3KNT9 176 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 Q3ZCU0 254 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 C22orf42Q6IC83 251 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 TRAT1Q6PIZ9 186 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 C16orf82Q7Z2V1 217 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 OR52L2PQ8NGH6 319 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 WIPF2Q8TF74 440 aaPredicted RBP11.99□□□□□ -0.49
VPS39-210ENST00000568357 ST6GALNAC6Q969X2 333 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 URM1Q9BTM9 101 aaKnown RBP11.99□□□□□ -0.49
VPS39-210ENST00000568357 WNT10AQ9GZT5 417 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 OR2S2Q9NQN1 319 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 PLEKHJ1Q9NW61 149 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 KCNIP1Q9NZI2 227 aa11.99□□□□□ -0.49
VPS39-210ENST00000568357 IGHV1-3A0A0C4DH29 117 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 TMEM272A0A1B0GTI8 110 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 M0QZ24 198 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 HSD17B6O14756 317 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 NAPSAO96009 420 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 GAPDHP04406 335 aaKnown RBP11.98□□□□□ -0.49
VPS39-210ENST00000568357 GALP22466 123 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 VEGFCP49767 419 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 ZNF816Q0VGE8 651 aaPredicted RBP11.98□□□□□ -0.49
VPS39-210ENST00000568357 HNF4GQ14541 408 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 GNMTQ14749 295 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 ABCA11PQ4W5N1 156 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 MORN2Q502X0 79 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 ZNF773Q6PK81 442 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 SLC25A48Q6ZT89 311 aaKnown RBP11.98□□□□□ -0.49
VPS39-210ENST00000568357 Q6ZTK2 550 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 MOB3BQ86TA1 216 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 ZNF554Q86TJ5 538 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 NR2C2APQ86WQ0 139 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 OR8H3Q8N146 312 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 AKR1E2Q96JD6 320 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 RAB9BQ9NP90 201 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 STEAP1Q9UHE8 339 aa11.98□□□□□ -0.49
VPS39-210ENST00000568357 NBEAL2Q6ZNJ1 2754 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 IGHV3-72A0A0B4J1Y9 119 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 IFITM5A6NNB3 132 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 PDCD5O14737 125 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 HMGN3Q15651 99 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 TMEM30BQ3MIR4 351 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 STEAP3Q658P3 488 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 ZNF880Q6PDB4 577 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 FCGR1BQ92637 280 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 RBMXL1Q96E39 390 aaKnown RBP11.97□□□□□ -0.49
VPS39-210ENST00000568357 ARHGAP5-AS1Q96IT6 56 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 HDHD3Q9BSH5 251 aaPredicted RBP11.97□□□□□ -0.49
VPS39-210ENST00000568357 TXNL4BQ9NX01 149 aaKnown RBP11.97□□□□□ -0.49
VPS39-210ENST00000568357 AK3Q9UIJ7 227 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 HSF4Q9ULV5 492 aa11.97□□□□□ -0.49
VPS39-210ENST00000568357 NOTCH1P46531 2555 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 A0A0B4J203 849 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 ZNF736B4DX44 427 aaPredicted RBP11.96□□□□□ -0.49
VPS39-210ENST00000568357 TSPAN15O95858 294 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 IGKV1D-33P01593 117 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 IGKV1-33P01594 117 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 LPLP06858 475 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 CD28P10747 220 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 RAB3BP20337 219 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 MYL9P24844 172 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 FGF9P31371 208 aaPredicted RBP11.96□□□□□ -0.49
VPS39-210ENST00000568357 PPP1CCP36873 323 aaKnown RBP11.96□□□□□ -0.49
VPS39-210ENST00000568357 VDAC2P45880 294 aaPredicted RBP11.96□□□□□ -0.49
VPS39-210ENST00000568357 HTD2P86397 168 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 EBI3Q14213 229 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 HES1Q14469 280 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 ARSJQ5FYB0 599 aaPredicted RBP11.96□□□□□ -0.49
VPS39-210ENST00000568357 PLAC9Q5JTB6 97 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 RTN4IP1Q8WWV3 396 aaPredicted RBP11.96□□□□□ -0.49
VPS39-210ENST00000568357 GALMQ96C23 342 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 PECRQ9BY49 303 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 CHMP1AQ9HD42 196 aaPredicted RBP11.96□□□□□ -0.49
VPS39-210ENST00000568357 RAB22AQ9UL26 194 aa11.96□□□□□ -0.49
VPS39-210ENST00000568357 TRBV6-6A0A0A6YYG2 114 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 SMIM30A4D0T7 59 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 YPEL1O60688 119 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 TMEM11P17152 192 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 IL3RAP26951 378 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 ZNF137PP52743 207 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 MOGAT2Q3SYC2 334 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 KCTD21Q4G0X4 260 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 LYG1Q8N1E2 194 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 OR56B1Q8NGI3 324 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 SETD6Q8TBK2 473 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 EAF1Q96JC9 268 aaPredicted RBP11.95□□□□□ -0.5
VPS39-210ENST00000568357 YPEL2Q96QA6 119 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 OR51E2Q9H255 320 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms