RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 HLA-DRB5Q30154 266 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 TMEM176BQ3YBM2 270 aaPredicted RBP0.84□□□□□ -2.27
VPS35-207ENST00000568191 SYT6Q5T7P8 510 aaPredicted RBP0.84□□□□□ -2.27
VPS35-207ENST00000568191 FAM104BQ5XKR9 115 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 LPCAT4Q643R3 524 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 STEAP4Q687X5 459 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 LRRN1Q6UXK5 716 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 CCDC121Q6ZUS5 278 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 FAM19A5Q7Z5A7 132 aaPredicted RBP0.84□□□□□ -2.27
VPS35-207ENST00000568191 TMEM144Q7Z5S9 345 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 PRNTQ86SH4 94 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 C10orf107Q8IVU9 208 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 GID4Q8IVV7 300 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 SLC30A8Q8IWU4 369 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 CPNE9Q8IYJ1 553 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 RIBC1Q8N443 379 aaPredicted RBP0.84□□□□□ -2.27
VPS35-207ENST00000568191 CCNYL1Q8N7R7 359 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 ACBD4Q8NC06 268 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 OR4K17Q8NGC6 315 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 OR51Q1Q8NH59 317 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 PIGXQ8TBF5 258 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 TEX47Q8TBZ9 253 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 HAVCR2Q8TDQ0 301 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 DTD1Q8TEA8 209 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 BLNKQ8WV28 456 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 AP3S1Q92572 193 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 RAB8BQ92930 207 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 TESCQ96BS2 214 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 DDIT4LQ96D03 193 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 ZMYND19Q96E35 227 aaPredicted RBP0.84□□□□□ -2.27
VPS35-207ENST00000568191 PGLYRP3Q96LB9 341 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 Q96MT0 163 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 RDH12Q96NR8 316 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 RBP7Q96R05 134 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 TEAD3Q99594 435 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 EBNA1BP2Q99848 306 aaKnown RBP0.84□□□□□ -2.27
VPS35-207ENST00000568191 PRRT1Q99946 306 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 EMC6Q9BV81 110 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 SFXN3Q9BWM7 321 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 CDCA4Q9BXL8 241 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 UGT2B28Q9BY64 529 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 SLC19A3Q9BZV2 496 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 TSGA10Q9BZW7 698 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 COA1Q9GZY4 146 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 TLNRD1Q9H1K6 362 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 FAM60AQ9NP50 221 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 C12orf4Q9NQ89 552 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 DIABLOQ9NR28 239 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 SLC2A9Q9NRM0 540 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 SPANXB1Q9NS25 103 aaPredicted RBP0.84□□□□□ -2.27
VPS35-207ENST00000568191 DDIT4Q9NX09 232 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 TAS2R13Q9NYV9 303 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 VAX2Q9UIW0 290 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 ANXA10Q9UJ72 324 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 NDRG2Q9UN36 371 aaKnown RBP0.84□□□□□ -2.27
VPS35-207ENST00000568191 SLC7A11Q9UPY5 501 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 TP53TG1Q9Y2A0 90 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 V9GYQ6 96 aa0.84□□□□□ -2.27
VPS35-207ENST00000568191 BAZ1BQ9UIG0 1483 aaKnown RBP0.84□□□□□ -2.28
VPS35-207ENST00000568191 MYO15BQ96JP2 1530 aa0.84□□□□□ -2.28
VPS35-207ENST00000568191 HELZ2Q9BYK8 2649 aaKnown RBP0.84□□□□□ -2.28
VPS35-207ENST00000568191 SIGLEC1Q9BZZ2 1709 aa0.84□□□□□ -2.28
VPS35-207ENST00000568191 FLT4P35916 1363 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 DNMT1P26358 1616 aaKnown RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 VIRMAQ69YN4 1812 aaKnown RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 DIDO1Q9BTC0 2240 aaKnown RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 LOC105371267A0A1B0GV96 52 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 DAPL1A0PJW8 107 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 TMEM72A0PK05 275 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 ARGFXA6NJG6 315 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 EFCAB9A8MZ26 197 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 C2orf74A8MZ97 194 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 F5H5K5 113 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 H3BQ85 93 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 J3QT63 122 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 KCNK1O00180 336 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 KPNA3O00505 521 aaPredicted RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 PHYHO14832 338 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 ZNF73O43830 326 aaPredicted RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 FADS1O60427 444 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 UPK1BO75841 260 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 DCTN3O75935 186 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 KRT75O95678 551 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 OR4E1P0C645 316 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 HIST1H1EP10412 219 aaKnown RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 PSMA1P25786 263 aaKnown RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 PAX6P26367 422 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 PYCR1P32322 319 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 SLCO1A2P46721 670 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 GCLMP48507 274 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 PSMD7P51665 324 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 FOXA1P55317 472 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 OR4D2P58180 307 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 DEFB103AP81534 67 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 FAM3AP98173 230 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 BAXQ07812 192 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 TAF1AQ15573 450 aaPredicted RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 MOGQ16653 247 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 LRRC26Q2I0M4 334 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 ZNF181Q2M3W8 571 aa0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms