RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 EBI3Q14213 229 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 DIAPH2-AS1Q14236 149 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 CENPVQ7Z7K6 275 aaPredicted RBP14.91□□□□□ -0.02
CLN3-227ENST00000567495 MOB3BQ86TA1 216 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 IZUMO1Q8IYV9 350 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 PRR18Q8N4B5 295 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 ZNF439Q8NDP4 499 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 OR1L1Q8NH94 360 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 GALMQ96C23 342 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 SULT4A1Q9BR01 284 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 FAAP24Q9BTP7 215 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 PLEKHJ1Q9NW61 149 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 ABRACLQ9P1F3 81 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 JPT1Q9UK76 154 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 AK6Q9Y3D8 172 aaKnown RBP14.91□□□□□ -0.02
CLN3-227ENST00000567495 MEGF8Q7Z7M0 2845 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 TRAV1-2A0A0B4J238 106 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 PDCD5O14737 125 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 IGKV1D-33P01593 117 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 IGKV1-33P01594 117 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 OPN1MWP04001 364 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 OPN1MW2P0DN77 364 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 OPN1MW3P0DN78 364 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 CD28P10747 220 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 CD1BP29016 333 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 LY6G6FQ5SQ64 297 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 MOB1BQ7L9L4 216 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 C6orf201Q7Z4U5 140 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 FAM89BQ8N5H3 189 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 OR5AU1Q8NGC0 362 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 RTN4IP1Q8WWV3 396 aaPredicted RBP14.9□□□□□ -0.02
CLN3-227ENST00000567495 NDUFB11Q9NX14 153 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 V9GY05 133 aa14.9□□□□□ -0.02
CLN3-227ENST00000567495 P2RY14Q15391 338 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 SSX1Q16384 188 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 TMEM95Q3KNT9 176 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 MORN2Q502X0 79 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 CT45A1Q5HYN5 189 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 CD200R1LQ6Q8B3 271 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 OR4F17Q8NGA8 305 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 OR10V1Q8NGI7 309 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 OR2T10Q8NGZ9 312 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 CT45A3Q8NHU0 189 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 FAM3DQ96BQ1 224 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 OR4F4Q96R69 305 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 GFI1Q99684 422 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 CITED2Q99967 270 aaPredicted RBP14.89□□□□□ -0.03
CLN3-227ENST00000567495 LPAR5Q9H1C0 372 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 HSF4Q9ULV5 492 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 MGAT4AQ9UM21 535 aa14.89□□□□□ -0.03
CLN3-227ENST00000567495 NOTCH1P46531 2555 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 TRBV6-6A0A0A6YYG2 114 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 TRDV1A0A1B0GX56 115 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 LANCL1O43813 399 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 YPEL1O60688 119 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 NAPSAO96009 420 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 MYL9P24844 172 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 REG1BP48304 166 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 ZNF134P52741 427 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 CD83Q01151 205 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 HNF4GQ14541 408 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 FBLN7Q53RD9 439 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 C9orf152Q5JTZ5 239 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 TGIF2LXQ8IUE1 241 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 C5orf56Q8N8D9 126 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 OR8H1Q8NGG4 311 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 FCGR1BQ92637 280 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 YPEL2Q96QA6 119 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 NICN1Q9BSH3 213 aa14.88□□□□□ -0.03
CLN3-227ENST00000567495 CHMP1AQ9HD42 196 aaPredicted RBP14.88□□□□□ -0.03
CLN3-227ENST00000567495 TET2Q6N021 2002 aaPredicted RBP14.87□□□□□ -0.03
CLN3-227ENST00000567495 SLC31A2O15432 143 aa14.87□□□□□ -0.03
CLN3-227ENST00000567495 HMGN3Q15651 99 aa14.87□□□□□ -0.03
CLN3-227ENST00000567495 NSUN5P1Q3KNT7 163 aa14.87□□□□□ -0.03
CLN3-227ENST00000567495 UBE2UQ5VVX9 321 aa14.87□□□□□ -0.03
CLN3-227ENST00000567495 FAM53AQ6NSI3 398 aaPredicted RBP14.87□□□□□ -0.03
CLN3-227ENST00000567495 OR51D1Q8NGF3 324 aa14.87□□□□□ -0.03
CLN3-227ENST00000567495 OR4X2Q8NGF9 303 aa14.87□□□□□ -0.03
CLN3-227ENST00000567495 OR56B1Q8NGI3 324 aa14.87□□□□□ -0.03
CLN3-227ENST00000567495 EAF1Q96JC9 268 aaPredicted RBP14.87□□□□□ -0.03
CLN3-227ENST00000567495 ABHD14AQ9BUJ0 271 aa14.87□□□□□ -0.03
CLN3-227ENST00000567495 STEAP1Q9UHE8 339 aa14.87□□□□□ -0.03
CLN3-227ENST00000567495 A0A0A6YYD4 124 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 MOSP00540 346 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 DEFA6Q01524 100 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 C2orf76Q3KRA6 126 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 ZNF880Q6PDB4 577 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 SPARTQ8N0X7 666 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 LYG1Q8N1E2 194 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 Q8N6K4 173 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 OR52L2PQ8NGH6 319 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 KCNK15Q9H427 330 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 RAB22AQ9UL26 194 aa14.86□□□□□ -0.03
CLN3-227ENST00000567495 IGHV3-72A0A0B4J1Y9 119 aa14.85□□□□□ -0.03
CLN3-227ENST00000567495 SOCS1O15524 211 aa14.85□□□□□ -0.03
CLN3-227ENST00000567495 PPP1CCP36873 323 aaKnown RBP14.85□□□□□ -0.03
CLN3-227ENST00000567495 OR2AK2Q8NG84 335 aa14.85□□□□□ -0.03
CLN3-227ENST00000567495 CHPT1Q8WUD6 406 aa14.85□□□□□ -0.03
CLN3-227ENST00000567495 R3HDM4Q96D70 268 aa14.85□□□□□ -0.03
CLN3-227ENST00000567495 C12orf4Q9NQ89 552 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms