RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ABCG5Q9H222 651 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 MMP28Q9H239 520 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.78■□□□□ 0.12
CLN3-225ENST00000566824 COMMD3Q9UBI1 195 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 MINOS1-NBL1R4GNA1 71 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 TENM1Q9UKZ4 2725 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 H3BMQ9 156 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 H3BUX3 64 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 CLDN34H7C241 214 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 TMEM127O75204 238 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 RNASE1P07998 156 aaKnown RBP15.77■□□□□ 0.12
CLN3-225ENST00000566824 RORCP51449 518 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 PRRX1P54821 245 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 HLA-DRB3P79483 266 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 CT45A1Q5HYN5 189 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 UBE2NLQ5JXB2 153 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 MOB1BQ7L9L4 216 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 ZNF554Q86TJ5 538 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 CT45A3Q8NHU0 189 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 ZNF596Q8TC21 504 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 IL1F10Q8WWZ1 152 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 KCTD12Q96CX2 325 aaKnown RBP15.77■□□□□ 0.12
CLN3-225ENST00000566824 OR2S2Q9NQN1 319 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 OR1A1Q9P1Q5 309 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 DPM3Q9P2X0 92 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 GNG12Q9UBI6 72 aa15.77■□□□□ 0.12
CLN3-225ENST00000566824 RNF212BA8MTL3 300 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 SERPINE3A8MV23 424 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 TRIM77I1YAP6 450 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 ARFRP1Q13795 201 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 HERPUD1Q15011 391 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 LY6EQ16553 131 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 LRRC75BQ2VPJ9 315 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 MORN2Q502X0 79 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 TPTE2P1Q5T6R2 138 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 HACD4Q5VWC8 232 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 C19orf24Q9BVV8 132 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 RBM38Q9H0Z9 239 aaKnown RBP15.76■□□□□ 0.11
CLN3-225ENST00000566824 STAB1Q9NY15 2570 aa15.76■□□□□ 0.11
CLN3-225ENST00000566824 TRDCB7Z8K6 153 aa15.75■□□□□ 0.11
CLN3-225ENST00000566824 HPGDSO60760 199 aa15.75■□□□□ 0.11
CLN3-225ENST00000566824 CD24P25063 80 aa15.75■□□□□ 0.11
CLN3-225ENST00000566824 HTD2P86397 168 aa15.75■□□□□ 0.11
CLN3-225ENST00000566824 TMEM86BQ8N661 226 aa15.75■□□□□ 0.11
CLN3-225ENST00000566824 DYNC2LI1Q8TCX1 351 aa15.75■□□□□ 0.11
CLN3-225ENST00000566824 FAM216AQ8WUB2 273 aa15.75■□□□□ 0.11
CLN3-225ENST00000566824 GALMQ96C23 342 aa15.75■□□□□ 0.11
CLN3-225ENST00000566824 RBMXL1Q96E39 390 aaKnown RBP15.75■□□□□ 0.11
CLN3-225ENST00000566824 AUNIPQ9H7T9 357 aa15.75■□□□□ 0.11
CLN3-225ENST00000566824 POMT1Q9Y6A1 747 aa15.75■□□□□ 0.11
CLN3-225ENST00000566824 FAM181BA6NEQ2 426 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 LEUTXA8MZ59 168 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 GPR137BO60478 399 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 GSTP1P09211 210 aaKnown RBP15.74■□□□□ 0.11
CLN3-225ENST00000566824 GSTT2P0CG29 244 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 GSTT2BP0CG30 244 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 ZNF182P17025 639 aaPredicted RBP15.74■□□□□ 0.11
CLN3-225ENST00000566824 ELK1P19419 428 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 MADCAM1Q13477 382 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 IGSF11Q5DX21 431 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 C16orf87Q6PH81 154 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 CCBE1Q6UXH8 406 aaPredicted RBP15.74■□□□□ 0.11
CLN3-225ENST00000566824 SLC25A48Q6ZT89 311 aaKnown RBP15.74■□□□□ 0.11
CLN3-225ENST00000566824 LINC00311Q8N616 119 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 JPT1Q9UK76 154 aa15.74■□□□□ 0.11
CLN3-225ENST00000566824 VGLL3A8MV65 326 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 SCGNO76038 276 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 REG1BP48304 166 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 MRPS15P82914 257 aaKnown RBP15.73■□□□□ 0.11
CLN3-225ENST00000566824 TMEM30BQ3MIR4 351 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 C8orf31Q8N9H6 132 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 OR10X1Q8NGY0 326 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 ZFAND2BQ8WV99 257 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 TMEM158Q8WZ71 300 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 GCDHQ92947 438 aaPredicted RBP15.73■□□□□ 0.11
CLN3-225ENST00000566824 ST6GALNAC6Q969X2 333 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 S100A16Q96FQ6 103 aaKnown RBP15.73■□□□□ 0.11
CLN3-225ENST00000566824 BCL7BQ9BQE9 202 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 OCSTAMPQ9BR26 566 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 DPAGT1Q9H3H5 408 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 RAB9BQ9NP90 201 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 DIABLOQ9NR28 239 aa15.73■□□□□ 0.11
CLN3-225ENST00000566824 A0A0A6YYH2 397 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 A6NJ64 397 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 FABP7O15540 132 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 XRCC3O43542 346 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 YPEL1O60688 119 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 TALDO1P37837 337 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 TAS2R20P59543 309 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 AANATQ16613 207 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 PNLIPRP3Q17RR3 467 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 ACOT12Q8WYK0 555 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 PHF21AQ96BD5 680 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 YPEL2Q96QA6 119 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 ST6GALNAC5Q9BVH7 336 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 MIXL1Q9H2W2 232 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 SLC23A1Q9UHI7 598 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 VPREB3Q9UKI3 123 aa15.72■□□□□ 0.11
CLN3-225ENST00000566824 A0A1W2PPI3 338 aa15.71■□□□□ 0.11
CLN3-225ENST00000566824 POM121CA8CG34 1229 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms