RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 MMP24Q9Y5R2 645 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 MGAM2Q2M2H8 2515 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 WNK1Q9H4A3 2382 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 SDCBPO00560 298 aaPredicted RBP7.88□□□□□ -1.15
CLN3-220ENST00000566040 AIREO43918 545 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 PROP1O75360 226 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 TSPAN9O75954 239 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 GABARAPO95166 117 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 HIST1H1DP16402 221 aaKnown RBP7.88□□□□□ -1.15
CLN3-220ENST00000566040 GNB3P16520 340 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 GZMHP20718 246 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 PPP1CCP36873 323 aaKnown RBP7.88□□□□□ -1.15
CLN3-220ENST00000566040 PSMD7P51665 324 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 RAG2P55895 527 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 PROK1P58294 105 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 ACTG1P63261 375 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 GDPGP1Q6ZNW5 385 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 ZNF554Q86TJ5 538 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 Q8N6K4 173 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 OR10V1Q8NGI7 309 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 OR5R1Q8NH85 324 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 WFDC12Q8WWY7 111 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 C5orf30Q96GV9 206 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 NEDD4LQ96PU5 975 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 ZNF251Q9BRH9 671 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 IFI27L2Q9H2X8 130 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 C16orf95Q9H693 158 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 Q9N2K0 584 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 OR1A1Q9P1Q5 309 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 SIGLEC9Q9Y336 463 aa7.88□□□□□ -1.15
CLN3-220ENST00000566040 ZNF736B4DX44 427 aaPredicted RBP7.87□□□□□ -1.15
CLN3-220ENST00000566040 TIMM23O14925 209 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 FCGR3AP08637 254 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 SCTP09683 121 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 RPL15P61313 204 aaKnown RBP7.87□□□□□ -1.15
CLN3-220ENST00000566040 VBP1P61758 197 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 HLA-DRB3P79483 266 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 HTD2P86397 168 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 ZNF816Q0VGE8 651 aaPredicted RBP7.87□□□□□ -1.15
CLN3-220ENST00000566040 FAM189A2Q15884 450 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 ZNF260Q3ZCT1 412 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 Q3ZCU0 254 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 MORN2Q502X0 79 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 LY6G6FQ5SQ64 297 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 C6orf183Q5T699 404 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 HIST2H2BDQ6DRA6 164 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 ANKRD13BQ86YJ7 626 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 Q8N2B8 174 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 OR56B1Q8NGI3 324 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 NDNFQ8TB73 568 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 MAFIPQ8WZ33 124 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 AGMATQ9BSE5 352 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 URM1Q9BTM9 101 aaKnown RBP7.87□□□□□ -1.15
CLN3-220ENST00000566040 MRPS26Q9BYN8 205 aaKnown RBP7.87□□□□□ -1.15
CLN3-220ENST00000566040 DPAGT1Q9H3H5 408 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 PLEKHJ1Q9NW61 149 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 RHBDL2Q9NX52 303 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 TRAPPC2LQ9UL33 140 aa7.87□□□□□ -1.15
CLN3-220ENST00000566040 LEUTXA8MZ59 168 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 CD3GP09693 182 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 PTHLHP12272 177 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 REG1BP48304 166 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 LGALS4P56470 323 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 EBI3Q14213 229 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 TMEM95Q3KNT9 176 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 Q6ZTK2 550 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 PRR18Q8N4B5 295 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 DRAM1Q8N682 238 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 RTN4IP1Q8WWV3 396 aaPredicted RBP7.86□□□□□ -1.15
CLN3-220ENST00000566040 GCDHQ92947 438 aaPredicted RBP7.86□□□□□ -1.15
CLN3-220ENST00000566040 SLC25A46Q96AG3 418 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 RAB3CQ96E17 227 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 OCSTAMPQ9BR26 566 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 CABLES2Q9BTV7 478 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 TOLLIPQ9H0E2 274 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 C12orf4Q9NQ89 552 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 SERTAD4Q9NUC0 356 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 ZNF230Q9UIE0 474 aaPredicted RBP7.86□□□□□ -1.15
CLN3-220ENST00000566040 JPT1Q9UK76 154 aa7.86□□□□□ -1.15
CLN3-220ENST00000566040 TET2Q6N021 2002 aaPredicted RBP7.86□□□□□ -1.15
CLN3-220ENST00000566040 IGHV1-3A0A0C4DH29 117 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 TMEM235A6NFC5 223 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 SH2D7A6NKC9 451 aaPredicted RBP7.85□□□□□ -1.15
CLN3-220ENST00000566040 OOSP1A8MZH6 123 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 HSD17B6O14756 317 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 SPINT2O43291 252 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 YPEL1O60688 119 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 OR3A3P47888 321 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 BLCAPP62952 87 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 SPCS2Q15005 226 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 TMEM30BQ3MIR4 351 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 IGSF11Q5DX21 431 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 IDNKQ5T6J7 187 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 TRAT1Q6PIZ9 186 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 Q6ZS49 121 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 MOB1BQ7L9L4 216 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 OR56B4Q8NH76 319 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 NUDCD2Q8WVJ2 157 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 YPEL2Q96QA6 119 aa7.85□□□□□ -1.15
CLN3-220ENST00000566040 ZNF747Q9BV97 191 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms