RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ZNF554Q86TJ5 538 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 PRR18Q8N4B5 295 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 FAM71E2Q8N5Q1 922 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 NKAIN3Q8N8D7 197 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 OR10V1Q8NGI7 309 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 CT45A3Q8NHU0 189 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 GGHQ92820 318 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 SELENOIQ9C0D9 397 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 ZNF580Q9UK33 172 aa14.7□□□□□ -0.06
CLN3-218ENST00000565688 A0A1W2PPK0 400 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 ZNF736B4DX44 427 aaPredicted RBP14.69□□□□□ -0.06
CLN3-218ENST00000565688 LANCL1O43813 399 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 RAMP3O60896 148 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 CRTAPO75718 401 aaPredicted RBP14.69□□□□□ -0.06
CLN3-218ENST00000565688 MAS1P04201 325 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 CD1AP06126 327 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 MGMTP16455 207 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 VDAC1P21796 283 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 RAB25P57735 213 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 LRRC36Q1X8D7 754 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 C11orf87Q6NUJ2 197 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 DHRSXQ8N5I4 330 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 OR5M8Q8NGP6 311 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 OR1L1Q8NH94 360 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 DERL3Q96Q80 235 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 UQCC2Q9BRT2 126 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 BANF2Q9H503 90 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 KCNIP1Q9NZI2 227 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 CNOT2Q9NZN8 540 aaKnown RBP14.69□□□□□ -0.06
CLN3-218ENST00000565688 GHRLQ9UBU3 117 aa14.69□□□□□ -0.06
CLN3-218ENST00000565688 IGHG4P01861 327 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 IGF1P05019 195 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 OR5H8P0DN80 308 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 RCC1P18754 421 aaPredicted RBP14.68□□□□□ -0.06
CLN3-218ENST00000565688 MAPK3P27361 379 aaPredicted RBP14.68□□□□□ -0.06
CLN3-218ENST00000565688 VHLP40337 213 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 F2RL1P55085 397 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 ADARB1P78563 741 aaKnown RBP14.68□□□□□ -0.06
CLN3-218ENST00000565688 CFHR3Q02985 330 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 Q96M66 194 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 DUX3Q96PT4 197 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 CHCHD6Q9BRQ6 235 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 TAF9BQ9HBM6 251 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 OR2S2Q9NQN1 319 aa14.68□□□□□ -0.06
CLN3-218ENST00000565688 MBNL3Q9NUK0 354 aaKnown RBP14.68□□□□□ -0.06
CLN3-218ENST00000565688 PNMA8CA0A1B0GUJ8 204 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 MYL12BO14950 172 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 CELP19835 753 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 LSAMPQ13449 338 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 MORN2Q502X0 79 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 LCNL1Q6ZST4 164 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 LYPD6Q86Y78 171 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 C4orf3Q8WVX3 66 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 TFAP2CQ92754 450 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 HSPB9Q9BQS6 159 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 CST11Q9H112 138 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 JPT1Q9UK76 154 aa14.67□□□□□ -0.06
CLN3-218ENST00000565688 UBE2QL1A1L167 161 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 PDCD6O75340 191 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 WNT4P56705 351 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 HTD2P86397 168 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 MMDQ15546 238 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 DEFB136Q30KP8 78 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 C9orf66Q5T8R8 295 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 SIGIRRQ6IA17 410 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 C8orf59Q8N0T1 100 aaPredicted RBP14.66□□□□□ -0.06
CLN3-218ENST00000565688 KCTD7Q96MP8 289 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 ABHD14AQ9BUJ0 271 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 ZNF107Q9UII5 783 aaPredicted RBP14.66□□□□□ -0.06
CLN3-218ENST00000565688 LRRC42Q9Y546 428 aa14.66□□□□□ -0.06
CLN3-218ENST00000565688 DNAH9Q9NYC9 4486 aa14.65□□□□□ -0.06
CLN3-218ENST00000565688 RGS11O94810 467 aa14.65□□□□□ -0.06
CLN3-218ENST00000565688 PSMB8P28062 276 aa14.65□□□□□ -0.06
CLN3-218ENST00000565688 PLCXD1Q9NUJ7 323 aa14.65□□□□□ -0.06
CLN3-218ENST00000565688 PSORS1C1Q9UIG5 152 aa14.65□□□□□ -0.06
CLN3-218ENST00000565688 UBBP0CG47 229 aa14.64□□□□□ -0.07
CLN3-218ENST00000565688 LUMP51884 338 aaPredicted RBP14.64□□□□□ -0.07
CLN3-218ENST00000565688 LY6G6FQ5SQ64 297 aa14.64□□□□□ -0.07
CLN3-218ENST00000565688 AHSA2Q719I0 299 aa14.64□□□□□ -0.07
CLN3-218ENST00000565688 OR52L2PQ8NGH6 319 aa14.64□□□□□ -0.07
CLN3-218ENST00000565688 MRPL30Q8TCC3 161 aaKnown RBP14.64□□□□□ -0.07
CLN3-218ENST00000565688 FAM46BQ96A09 425 aa14.64□□□□□ -0.07
CLN3-218ENST00000565688 WWC2-AS2Q96NR7 200 aa14.64□□□□□ -0.07
CLN3-218ENST00000565688 ERGIC3Q9Y282 383 aa14.64□□□□□ -0.07
CLN3-218ENST00000565688 SEC14L6B5MCN3 397 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 YPEL1O60688 119 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 NHLRC4P0CG21 123 aaPredicted RBP14.63□□□□□ -0.07
CLN3-218ENST00000565688 SLC2A2P11168 524 aaPredicted RBP14.63□□□□□ -0.07
CLN3-218ENST00000565688 MYF6P23409 242 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 PPP1CCP36873 323 aaKnown RBP14.63□□□□□ -0.07
CLN3-218ENST00000565688 ACTBP60709 375 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 FHL3Q13643 280 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 GNMTQ14749 295 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 TMEM65Q6PI78 240 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 NANOGP1Q8N7R0 232 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 MYOZ3Q8TDC0 251 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 GALMQ96C23 342 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 NEDD4LQ96PU5 975 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 YPEL2Q96QA6 119 aa14.63□□□□□ -0.07
CLN3-218ENST00000565688 ZNF251Q9BRH9 671 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms