RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 COMPP49747 757 aaPredicted RBP7.39□□□□□ -1.23
VPS35-206ENST00000565228 PSMD7P51665 324 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 RBM39Q14498 530 aaKnown RBP7.39□□□□□ -1.23
VPS35-206ENST00000565228 FAM189A2Q15884 450 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 LRRC75BQ2VPJ9 315 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 ZNF260Q3ZCT1 412 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 MORN2Q502X0 79 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 GPR107Q5VW38 600 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 GDPGP1Q6ZNW5 385 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 IZUMO1Q8IYV9 350 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 LINC00311Q8N616 119 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 TMEM86BQ8N661 226 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 OR9G1Q8NH87 305 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 SSMEM1Q8WWF3 244 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 PTX4Q96A99 478 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 MALSU1Q96EH3 234 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 C5orf30Q96GV9 206 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 URM1Q9BTM9 101 aaKnown RBP7.39□□□□□ -1.23
VPS35-206ENST00000565228 ATG5Q9H1Y0 275 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 MMP28Q9H239 520 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 VPREB3Q9UKI3 123 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 FAM96BQ9Y3D0 163 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 POMT1Q9Y6A1 747 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 TGP01266 2768 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 hCG_1809904A0A1W2PP81 198 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 A0A1W2PPE2 198 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 A0A1W2PR64 198 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 A0A1W2PRV1 198 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 TMEM235A6NFC5 223 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 CA11O75493 328 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 FCGR3AP08637 254 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 GSTT2P0CG29 244 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 GSTT2BP0CG30 244 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 HTR1DP28221 377 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 REG1BP48304 166 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 SERPINB10P48595 397 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 LINC00205P59089 165 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 HABP2Q14520 560 aaPredicted RBP7.38□□□□□ -1.23
VPS35-206ENST00000565228 MINOS1Q5TGZ0 78 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 RBMS3Q6XE24 437 aaKnown RBP7.38□□□□□ -1.23
VPS35-206ENST00000565228 SLC25A48Q6ZT89 311 aaKnown RBP7.38□□□□□ -1.23
VPS35-206ENST00000565228 OR10A7Q8NGE5 316 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 OR56B1Q8NGI3 324 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 OR52M1Q8NGK5 317 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 NUDCD2Q8WVJ2 157 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 GCDHQ92947 438 aaPredicted RBP7.38□□□□□ -1.23
VPS35-206ENST00000565228 SLC25A46Q96AG3 418 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 RAB3CQ96E17 227 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 RITA1Q96K30 269 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 JMJD8Q96S16 334 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 ZNF251Q9BRH9 671 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 IFI27L2Q9H2X8 130 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 RHBDL2Q9NX52 303 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 DPM3Q9P2X0 92 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 TCF19Q9Y242 345 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 MINOS1-NBL1R4GNA1 71 aa7.38□□□□□ -1.23
VPS35-206ENST00000565228 IGHV3-72A0A0B4J1Y9 119 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 ST8SIA5O15466 376 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 EIF4EP06730 217 aaKnown RBP7.37□□□□□ -1.23
VPS35-206ENST00000565228 OR3A3P47888 321 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 DYNLT3P51808 116 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 LGALS4P56470 323 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 BLCAPP62952 87 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 HLA-DRB3P79483 266 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 SCGB2A2Q13296 93 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 MADCAM1Q13477 382 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 AANATQ16613 207 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 CDNFQ49AH0 187 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 IGSF11Q5DX21 431 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 OR52W1Q6IF63 320 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 DRAM1Q8N682 238 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 LINC01006Q8NI28 216 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 SETD6Q8TBK2 473 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 CMSS1Q9BQ75 279 aaKnown RBP7.37□□□□□ -1.23
VPS35-206ENST00000565228 AGMATQ9BSE5 352 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 ZNF702PQ9H963 129 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 OR2S2Q9NQN1 319 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS35-206ENST00000565228 SPATA2Q9UM82 520 aa7.37□□□□□ -1.23
VPS35-206ENST00000565228 WNK1Q9H4A3 2382 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 LEUTXA8MZ59 168 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 TIMM23O14925 209 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 FCER2P06734 321 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 ZNF137PP52743 207 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 ACTG1P63261 375 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 HTD2P86397 168 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 TMEM95Q3KNT9 176 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 C6orf183Q5T699 404 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 GVQW1Q8N7I0 195 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 C8orf31Q8N9H6 132 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 OR56B4Q8NH76 319 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 OCSTAMPQ9BR26 566 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 RBM38Q9H0Z9 239 aaKnown RBP7.36□□□□□ -1.23
VPS35-206ENST00000565228 C12orf4Q9NQ89 552 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 CEPT1Q9Y6K0 416 aa7.36□□□□□ -1.23
VPS35-206ENST00000565228 TRAV18A0A075B6X5 111 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 IGHV1-3A0A0C4DH29 117 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 LINC01548A6NM66 108 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 TRDCB7Z8K6 153 aa7.35□□□□□ -1.23
VPS35-206ENST00000565228 TOR1AO14656 332 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms