RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ABHD14BQ96IU4 210 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 REPIN1Q9BWE0 567 aaKnown RBP11.26□□□□□ -0.61
CLN3-210ENST00000563874 PRDM13Q9H4Q3 707 aa11.26□□□□□ -0.61
CLN3-210ENST00000563874 CHD3Q12873 2000 aaKnown RBP11.25□□□□□ -0.61
CLN3-210ENST00000563874 MRPL33O75394 65 aaKnown RBP11.25□□□□□ -0.61
CLN3-210ENST00000563874 DFFBO76075 338 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 CNOT4O95628 575 aaKnown RBP11.25□□□□□ -0.61
CLN3-210ENST00000563874 CFIP05156 583 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 PGA5P0DJD9 388 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 BCL2P10415 239 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 FOLR3P41439 243 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 Q0VFX4 171 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 SSX2Q16385 188 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 Q6ZS49 121 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 C1orf87Q8N0U7 546 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 OR10J5Q8NHC4 309 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 MRPL30Q8TCC3 161 aaKnown RBP11.25□□□□□ -0.61
CLN3-210ENST00000563874 SCGB1C1Q8TD33 95 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 PSMF1Q92530 271 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 PRO1933Q9H354 126 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 PPP1R3CQ9UQK1 317 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 TRIOBPQ9H2D6 2365 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 CEBPZOSA8MTT3 80 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 HMGB3O15347 200 aaKnown RBP11.25□□□□□ -0.61
CLN3-210ENST00000563874 HOXC12P31275 282 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 GNG10P50151 68 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 CEACAM21Q3KPI0 293 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 Q8NFD4 153 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 SGCZQ96LD1 299 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 UFSP2Q9NUQ7 469 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 DNAJC13O75165 2243 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 KIAA2026Q5HYC2 2103 aa11.25□□□□□ -0.61
CLN3-210ENST00000563874 IGHV3-64DA0A0J9YX35 117 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 DUXBA0A1W2PPF3 345 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 KIAA1324LA8MWY0 1029 aaPredicted RBP11.24□□□□□ -0.61
CLN3-210ENST00000563874 IGKV1-39P01597 117 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 IGKV1D-39P04432 117 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 TMEM95Q3KNT9 176 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 COLCA1Q6ZS62 124 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 CLDN23Q96B33 292 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 PLK3Q9H4B4 646 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 PRDM6Q9NQX0 595 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 OR2W1Q9Y3N9 320 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 ARHGAP21Q5T5U3 1957 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 OR5H1A6NKK0 313 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 CD55P08174 381 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 UNQ6494/PRO21346Q6UXR6 183 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 H1FOOQ8IZA3 346 aaPredicted RBP11.24□□□□□ -0.61
CLN3-210ENST00000563874 NECAP1Q8NC96 275 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 RCC1LQ96I51 464 aaKnown RBP11.24□□□□□ -0.61
CLN3-210ENST00000563874 UBE2ZQ9H832 354 aaPredicted RBP11.24□□□□□ -0.61
CLN3-210ENST00000563874 GFOD1Q9NXC2 390 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 RBM7Q9Y580 266 aaKnown RBP11.24□□□□□ -0.61
CLN3-210ENST00000563874 A0A1B0GU03 582 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A10PA6NDY2 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A18PA6NE21 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A16PA6NEW6 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A20PA6NIJ5 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A8PA6NJQ4 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A7PA6NKC0 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A22PA8MWA6 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A12PA8MX19 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A5PA8MXJ8 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A23PA8MXZ1 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 CLDN34H7C241 214 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A15PP0C7V4 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A13PP0C7W8 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A14PP0C7W9 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 FAM90A24PP0C7X0 464 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 ZFP36L1Q07352 338 aaKnown RBP11.24□□□□□ -0.61
CLN3-210ENST00000563874 CLEC12BQ2HXU8 276 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 ZNF324BQ6AW86 544 aaPredicted RBP11.24□□□□□ -0.61
CLN3-210ENST00000563874 SPINK14Q6IE38 97 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 CABLES2Q9BTV7 478 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 PRO3102Q9H379 93 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 PSENENQ9NZ42 101 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 OR14J1Q9UGF5 321 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 TCFL5Q9UL49 500 aa11.24□□□□□ -0.61
CLN3-210ENST00000563874 TRAV24A0A0B4J272 114 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 A0A1W2PR80 420 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 SYNGR2O43760 224 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 HIST1H1BP16401 226 aaKnown RBP11.23□□□□□ -0.61
CLN3-210ENST00000563874 OR8G1Q15617 311 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 SPANXN5Q5MJ07 72 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 WDR25Q64LD2 544 aaPredicted RBP11.23□□□□□ -0.61
CLN3-210ENST00000563874 HAPLN4Q86UW8 402 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 TUSC5Q8IXB3 177 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 HIST1H2AAQ96QV6 131 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 RBKSQ9H477 322 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 CYTIPO60759 359 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 RHBDL1O75783 438 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 CELA3AP09093 270 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 CTXN2P0C2S0 81 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 S100GP29377 79 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 ZNF525Q8N782 197 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 DTD1Q8TEA8 209 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 RAB40CQ96S21 281 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 OPA3Q9H6K4 179 aa11.23□□□□□ -0.61
CLN3-210ENST00000563874 CISD1Q9NZ45 108 aaKnown RBP11.23□□□□□ -0.61
CLN3-210ENST00000563874 KCNS2Q9ULS6 477 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms