RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PSG2P11465 335 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 NKX2-1P43699 371 aaPredicted RBP6.32□□□□□ -1.4
VPS39-204ENST00000561818 OR3A1P47881 315 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 PPOXP50336 477 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 S100A10P60903 97 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 VAMP2P63027 116 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 COL10A1Q03692 680 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 TLE1Q04724 770 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 BSPH1Q075Z2 132 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 IL15RAQ13261 267 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 EXOSC2Q13868 293 aaKnown RBP6.32□□□□□ -1.4
VPS39-204ENST00000561818 ATXN7L3Q14CW9 347 aaPredicted RBP6.32□□□□□ -1.4
VPS39-204ENST00000561818 PHLDA2Q53GA4 152 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 IGSF11Q5DX21 431 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 TMEM268Q5VZI3 342 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 FAM71F2Q6NXP2 309 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 C11orf53Q8IXP5 236 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 KDF1Q8NAX2 398 aaPredicted RBP6.32□□□□□ -1.4
VPS39-204ENST00000561818 GLYATL2Q8WU03 294 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 RNF141Q8WVD5 230 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 CORO2AQ92828 525 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 ZNF471Q9BX82 626 aaPredicted RBP6.32□□□□□ -1.4
VPS39-204ENST00000561818 MRPL37Q9BZE1 423 aaKnown RBP6.32□□□□□ -1.4
VPS39-204ENST00000561818 HEXA-AS1Q9H8Q6 139 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 LINC00574Q9H8X3 128 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 PLSCR3Q9NRY6 295 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 RDH8Q9NYR8 311 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 LUZP4Q9P127 313 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 ERRFI1Q9UJM3 462 aaPredicted RBP6.32□□□□□ -1.4
VPS39-204ENST00000561818 KCNS2Q9ULS6 477 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 WSB1Q9Y6I7 421 aa6.32□□□□□ -1.4
VPS39-204ENST00000561818 SPTA1P02549 2419 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 ANKRD11Q6UB99 2663 aaPredicted RBP6.31□□□□□ -1.4
VPS39-204ENST00000561818 TRBV23-1A0A0A0MS06 115 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 hCG_1809904A0A1W2PP81 198 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 A0A1W2PPE2 198 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 A0A1W2PR64 198 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 A0A1W2PRV1 198 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 FAM221AA4D161 298 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 H0YL77 283 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 TEX46H3BTG2 121 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 F2RL2O00254 374 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 SIGLEC5O15389 551 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 SPRY3O43610 288 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 ZNF737O75373 536 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 PGLYRP1O75594 196 aaPredicted RBP6.31□□□□□ -1.4
VPS39-204ENST00000561818 DFFBO76075 338 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 HBZP02008 142 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 RCC1P18754 421 aaPredicted RBP6.31□□□□□ -1.4
VPS39-204ENST00000561818 CXCL2P19875 107 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 PI3P19957 117 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 CEACAM6P40199 344 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 AKR1C2P52895 323 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 RPL23AP62750 156 aaKnown RBP6.31□□□□□ -1.4
VPS39-204ENST00000561818 HBG1P69891 147 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 HBG2P69892 147 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 RPP30P78346 268 aaKnown RBP6.31□□□□□ -1.4
VPS39-204ENST00000561818 SNTB1Q13884 538 aaKnown RBP6.31□□□□□ -1.4
VPS39-204ENST00000561818 HERPUD1Q15011 391 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 ADIPOQQ15848 244 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 LRRC37A5PQ49AS3 106 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 LRRC10Q5BKY1 277 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 PRAMEF6Q5VXH4 476 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 STUMQ69YW2 141 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 ADAM5Q6NVV9 412 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 VHLLQ6RSH7 139 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 UQCC3Q6UW78 93 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 ZNF818PQ6ZRF7 136 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 MOGAT3Q86VF5 341 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 STX12Q86Y82 276 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 BAP18Q8IXM2 172 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 RPRMLQ8N4K4 120 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 EIF4E3Q8N5X7 224 aaKnown RBP6.31□□□□□ -1.4
VPS39-204ENST00000561818 SLC35G3Q8N808 338 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 C8orf31Q8N9H6 132 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 UBAC2Q8NBM4 344 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 GALNT11Q8NCW6 608 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 ANGPTL6Q8NI99 470 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 ITLN1Q8WWA0 313 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 ST8SIA2Q92186 375 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 DYRK2Q92630 601 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 SAT2Q96F10 170 aaPredicted RBP6.31□□□□□ -1.4
VPS39-204ENST00000561818 SEC22AQ96IW7 307 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 ZNF488Q96MN9 340 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 CLCC1Q96S66 551 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 GCM1Q9NP62 436 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 UFSP2Q9NUQ7 469 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 GSKIPQ9P0R6 139 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 GNG12Q9UBI6 72 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 KAAG1Q9UBP8 84 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 RNF150Q9ULK6 438 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 AUP1Q9Y679 476 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 LINC00312Q9Y6C7 94 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 SVILO95425 2214 aa6.31□□□□□ -1.4
VPS39-204ENST00000561818 CEP295Q9C0D2 2601 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 FREM2Q5SZK8 3169 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 UMAD1C9J7I0 102 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 KRBOX1C9JBD0 128 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 C12orf77C9JDV5 145 aa6.3□□□□□ -1.4
VPS39-204ENST00000561818 CCSO14618 274 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms