RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PPYP01298 95 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 OR5AC1P0C628 307 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 FSTP19883 344 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 PPP1R1AQ13522 171 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 NRN1LQ496H8 165 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 FDX2Q6P4F2 183 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 IL17RELQ6ZVW7 336 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 TGIF2LXQ8IUE1 241 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF485Q8NCK3 441 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 PLPPR1Q8TBJ4 325 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 C10orf35Q96D05 121 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 Q96M66 194 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 OR51I2Q9H344 312 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 GNB4Q9HAV0 340 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 SCPEP1Q9HB40 452 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 MGAT4AQ9UM21 535 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 COL5A1P20908 1838 aaPredicted RBP4.58□□□□□ -1.68
VPS13C-209ENST00000560637 KANTRA0A1W2PQU2 76 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 TRIM64BA6NI03 449 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 TRIM64CA6NLI5 447 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 AGPAT2O15120 278 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 IGHV3-48P01763 117 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 OR4E1P0C645 316 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 ARHGDIBP52566 201 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 LINC00205P59089 165 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 KLRD1Q13241 179 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 MMDQ15546 238 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 MSMPQ1L6U9 139 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 CLEC12BQ2HXU8 276 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 MPV17LQ2QL34 196 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 ACTBL2Q562R1 376 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 CHPT1Q8WUD6 406 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 DMRTA2Q96SC8 542 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 TMEM246Q9BRR3 403 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 CALYQ9NYX4 217 aa4.58□□□□□ -1.68
VPS13C-209ENST00000560637 DOCK11Q5JSL3 2073 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 TRDCB7Z8K6 153 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 F2RL2O00254 374 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 KCNAB3O43448 404 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 SSSCA1O60232 199 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 IFNA2P01563 188 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 SNRPCP09234 159 aaKnown RBP4.57□□□□□ -1.68
VPS13C-209ENST00000560637 MDH2P40926 338 aaKnown RBP4.57□□□□□ -1.68
VPS13C-209ENST00000560637 LPAR6P43657 344 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 RAB13P51153 203 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 RPL39P5Q59GN2 51 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 FAM209AQ5JX71 171 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 C1orf100Q5SVJ3 147 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ASPHD2Q6ICH7 369 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 OR8H3Q8N146 312 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 HSD17B11Q8NBQ5 300 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ADAD2Q8NCV1 583 aaKnown RBP4.57□□□□□ -1.68
VPS13C-209ENST00000560637 PXT1Q8NFP0 134 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 NEIL1Q96FI4 390 aaPredicted RBP4.57□□□□□ -1.68
VPS13C-209ENST00000560637 COMMD5Q9GZQ3 224 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 TLNRD1Q9H1K6 362 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 SLC35D1Q9NTN3 355 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 IL36GQ9NZH8 169 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 KIAA1456Q9P272 454 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 IGKV3-7A0A075B6H7 116 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 A0A0B4J2A0 478 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 IGHV3-35A0A0C4DH35 117 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 PQLC2LA1A4F0 135 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 TMEM14DPA8MWL7 114 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 C12orf77C9JDV5 145 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 CST7O76096 145 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 CTXN2P0C2S0 81 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 GZMHP20718 246 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 GALP22466 123 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 CHATP28329 748 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ETV6P41212 452 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 HLA-DRB3P79483 266 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 CD300CQ08708 224 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ZMYND11Q15326 602 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF260Q3ZCT1 412 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF554Q86TJ5 538 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 LGI3Q8N145 548 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ABHD12Q8N2K0 398 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 MRGPRFQ96AM1 343 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 UPRTQ96BW1 309 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 SLC25A21Q9BQT8 299 aaPredicted RBP4.57□□□□□ -1.68
VPS13C-209ENST00000560637 SSBP3Q9BWW4 388 aaPredicted RBP4.57□□□□□ -1.68
VPS13C-209ENST00000560637 SHPKQ9UHJ6 478 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ATPIF1Q9UII2 106 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 MAB21L2Q9Y586 359 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 IGKV1D-8A0A087WSZ0 117 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 A0A0A6YYJ9 748 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 TRAV40A0A0B4J280 105 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 GPR31O00270 319 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 PLA2G10O15496 165 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 RAB6AP20340 208 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 OTX1P32242 354 aaPredicted RBP4.57□□□□□ -1.68
VPS13C-209ENST00000560637 G6PCP35575 357 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 TAS2R31P59538 309 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 RPL11P62913 178 aaKnown RBP4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF616Q08AN1 781 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 IL24Q13007 206 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 RTL8BQ17RB0 113 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 PNLIPRP3Q17RR3 467 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF324BQ6AW86 544 aaPredicted RBP4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 174.9 ms