RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 SIGLECL1Q8N7X8 197 aa17.67■□□□□ 0.42
SNX1-210ENST00000560260 ZNF439Q8NDP4 499 aa17.67■□□□□ 0.42
SNX1-210ENST00000560260 MCFD2Q8NI22 146 aa17.67■□□□□ 0.42
SNX1-210ENST00000560260 C6orf62Q9GZU0 229 aaPredicted RBP17.67■□□□□ 0.42
SNX1-210ENST00000560260 TRDCB7Z8K6 153 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 RGS5O15539 181 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 PPP1CCP36873 323 aaKnown RBP17.66■□□□□ 0.42
SNX1-210ENST00000560260 TALDO1P37837 337 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 CNIH2Q6PI25 160 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 Q6ZS49 121 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 OR9G1Q8NH87 305 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 IL1F10Q8WWZ1 152 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 PARP12Q9H0J9 701 aaKnown RBP17.66■□□□□ 0.42
SNX1-210ENST00000560260 OR1A1Q9P1Q5 309 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 GNG12Q9UBI6 72 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 JPT1Q9UK76 154 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 MGAT4AQ9UM21 535 aa17.66■□□□□ 0.42
SNX1-210ENST00000560260 MEIS3P1A6NDR6 274 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 J3QR06 171 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 FABP7O15540 132 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 GSTT2P0CG29 244 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 GSTT2BP0CG30 244 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 MNDAP41218 407 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 HTD2P86397 168 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 PITPNAQ00169 270 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 HLA-DRB5Q30154 266 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 TMEM30BQ3MIR4 351 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 PRIMA1Q86XR5 153 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 GVQW1Q8N7I0 195 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 BEND2Q8NDZ0 799 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 GALMQ96C23 342 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 PRDM13Q9H4Q3 707 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 OCEL1Q9H607 264 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 RAB9BQ9NP90 201 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 OR2S2Q9NQN1 319 aa17.65■□□□□ 0.42
SNX1-210ENST00000560260 MRPS7Q9Y2R9 242 aaKnown RBP17.65■□□□□ 0.42
SNX1-210ENST00000560260 SCGB2A2Q13296 93 aa17.64■□□□□ 0.41
SNX1-210ENST00000560260 SRSF7Q16629 238 aaKnown RBP eCLIP17.64■□□□□ 0.41
SNX1-210ENST00000560260 SNX29P2Q8IUI4 249 aa17.64■□□□□ 0.41
SNX1-210ENST00000560260 ZNF596Q8TC21 504 aa17.64■□□□□ 0.41
SNX1-210ENST00000560260 CABLES2Q9BTV7 478 aa17.64■□□□□ 0.41
SNX1-210ENST00000560260 ST6GALNAC5Q9BVH7 336 aa17.64■□□□□ 0.41
SNX1-210ENST00000560260 MMP28Q9H239 520 aa17.64■□□□□ 0.41
SNX1-210ENST00000560260 ESM1Q9NQ30 184 aa17.64■□□□□ 0.41
SNX1-210ENST00000560260 TBL2Q9Y4P3 447 aaKnown RBP17.64■□□□□ 0.41
SNX1-210ENST00000560260 FCER2P06734 321 aa17.63■□□□□ 0.41
SNX1-210ENST00000560260 KIR2DS4P43632 304 aa17.63■□□□□ 0.41
SNX1-210ENST00000560260 ZNF134P52741 427 aa17.63■□□□□ 0.41
SNX1-210ENST00000560260 SRSF2Q01130 221 aaKnown RBP17.63■□□□□ 0.41
SNX1-210ENST00000560260 KIR2DS1Q14954 304 aa17.63■□□□□ 0.41
SNX1-210ENST00000560260 MORN2Q502X0 79 aa17.63■□□□□ 0.41
SNX1-210ENST00000560260 IGSF11Q5DX21 431 aa17.63■□□□□ 0.41
SNX1-210ENST00000560260 OR4A4PQ8NGN8 299 aa17.63■□□□□ 0.41
SNX1-210ENST00000560260 OCSTAMPQ9BR26 566 aa17.63■□□□□ 0.41
SNX1-210ENST00000560260 ANAPC10Q9UM13 185 aa17.63■□□□□ 0.41
SNX1-210ENST00000560260 TOR1AO14656 332 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 LGALS4P56470 323 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 CT45A1Q5HYN5 189 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 STEAP3Q658P3 488 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 LINC00311Q8N616 119 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 C8orf31Q8N9H6 132 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 CT45A3Q8NHU0 189 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 SNAPC3Q92966 411 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 SLC23A1Q9UHI7 598 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 ADAM30Q9UKF2 790 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 A3GALT2U3KPV4 340 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 JMJD1CQ15652 2540 aa17.62■□□□□ 0.41
SNX1-210ENST00000560260 LY6LH3BQJ8 138 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 BUB1B-PAK6H3BSN5 160 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 YPEL1O60688 119 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 FBP1P09467 338 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 HTR1DP28221 377 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 DIAPH2-AS1Q14236 149 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 Q3ZCU0 254 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 MINOS1Q5TGZ0 78 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 SLC25A48Q6ZT89 311 aaKnown RBP17.61■□□□□ 0.41
SNX1-210ENST00000560260 HOGA1Q86XE5 327 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 LDLRAD3Q86YD5 345 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 GPX8Q8TED1 209 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 YPEL2Q96QA6 119 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 ABHD1Q96SE0 405 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 MMP27Q9H306 513 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 MINOS1-NBL1R4GNA1 71 aa17.61■□□□□ 0.41
SNX1-210ENST00000560260 VENTXO95231 258 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 TNFSF8P32971 234 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 PRSS3P35030 304 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 PRRX1P54821 245 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 HILS1P60008 231 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 PLA1AQ53H76 456 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 RNASE12Q5GAN4 147 aaKnown RBP17.6■□□□□ 0.41
SNX1-210ENST00000560260 LY6G6FQ5SQ64 297 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 Q6YL49 198 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 ZDHHC22Q8N966 263 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 ZNF418Q8TF45 676 aaPredicted RBP17.6■□□□□ 0.41
SNX1-210ENST00000560260 DIRAS2Q96HU8 199 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 DPM3Q9P2X0 92 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 ANXA10Q9UJ72 324 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 FAM96BQ9Y3D0 163 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 HILPDAQ9Y5L2 63 aa17.6■□□□□ 0.41
SNX1-210ENST00000560260 TRBV6-7A0A0A0MS04 114 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms