RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ANXA10Q9UJ72 324 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 NUP50Q9UKX7 468 aa7.56□□□□□ -1.2
LDLR-210ENST00000559340 AMMECR1Q9Y4X0 333 aaPredicted RBP7.56□□□□□ -1.2
LDLR-210ENST00000559340 ZANQ9Y493 2812 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 IGHV1-69DA0A0B4J2H0 117 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 CENPVL3A0A0U1RRI6 287 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 MEX3AA1L020 520 aaKnown RBP7.55□□□□□ -1.2
LDLR-210ENST00000559340 ITGB1BP1O14713 200 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 GSTZ1O43708 216 aaPredicted RBP7.55□□□□□ -1.2
LDLR-210ENST00000559340 SSX5O60225 188 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 IGHV1-69P01742 117 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 SCTP09683 121 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 GSTT2P0CG29 244 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 NAT1P18440 290 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 TBPP20226 339 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 OMGP23515 440 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 COX7A1P24310 79 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 CEACAM3P40198 252 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 CEACAM6P40199 344 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 INPP1P49441 399 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 RAB7AP51149 207 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 ARHGDIBP52566 201 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 AP3S2P59780 193 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 LTC4SQ16873 150 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 MIDNQ504T8 468 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 MINOS1Q5TGZ0 78 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 ZNF782Q6ZMW2 699 aaPredicted RBP7.55□□□□□ -1.2
LDLR-210ENST00000559340 GDPD1Q8N9F7 314 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 C8orf31Q8N9H6 132 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 BEND2Q8NDZ0 799 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 OR11H6Q8NGC7 330 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 OR5AP2Q8NGF4 316 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 OR5H2Q8NGV7 314 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 SMIM4Q8WVI0 70 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 ABHD1Q96SE0 405 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 SMR3AQ99954 134 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 NECAP2Q9NVZ3 263 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 MTFP1Q9UDX5 166 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 ZNF230Q9UIE0 474 aaPredicted RBP7.55□□□□□ -1.2
LDLR-210ENST00000559340 ELF5Q9UKW6 265 aaPredicted RBP7.55□□□□□ -1.2
LDLR-210ENST00000559340 TBL2Q9Y4P3 447 aaKnown RBP7.55□□□□□ -1.2
LDLR-210ENST00000559340 MINOS1-NBL1R4GNA1 71 aa7.55□□□□□ -1.2
LDLR-210ENST00000559340 IGHV2-26A0A0B4J1V2 119 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 TRAV40A0A0B4J280 105 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 LEUTXA8MZ59 168 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 ZNF736B4DX44 427 aaPredicted RBP7.54□□□□□ -1.2
LDLR-210ENST00000559340 RNASEK-C17orf49H0YIS7 233 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 J3QR06 171 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 NPFFO15130 113 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 IFNA6P05013 189 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 ARG1P05089 322 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 CSF1P09603 554 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 PTHLHP12272 177 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 EPHA1P21709 976 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 HTR1DP28221 377 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 LOXL3P58215 753 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 TAS2R19P59542 299 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 CDK10Q15131 360 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 MORN2Q502X0 79 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 TMEM17Q86X19 198 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 LINC00311Q8N616 119 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 TMEM229BQ8NBD8 167 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 OR2AK2Q8NG84 335 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 OR10X1Q8NGY0 326 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 OR52I2Q8NH67 350 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 DEDD2Q8WXF8 326 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 THAP7Q9BT49 309 aaPredicted RBP7.54□□□□□ -1.2
LDLR-210ENST00000559340 CABLES2Q9BTV7 478 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 WDR12Q9GZL7 423 aaKnown RBP7.54□□□□□ -1.2
LDLR-210ENST00000559340 TOLLIPQ9H0E2 274 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 ZNF69Q9UC07 566 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 SLC23A1Q9UHI7 598 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 ANAPC10Q9UM13 185 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 FAM96BQ9Y3D0 163 aa7.54□□□□□ -1.2
LDLR-210ENST00000559340 RBM7Q9Y580 266 aaKnown RBP7.54□□□□□ -1.2
LDLR-210ENST00000559340 TRBV6-7A0A0A0MS04 114 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 IGHV3-43A0A0B4J1X8 118 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 MEIOCA2RUB1 952 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 MEIS3P1A6NDR6 274 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 OOSP1A8MZH6 123 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 BET1O15155 118 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 MMP23AO75900 390 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 SLC22A5O76082 557 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 AVPP01185 164 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 IGHV3-43DP0DP04 118 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 SRD5A1P18405 259 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 FAUP35544 74 aaKnown RBP7.53□□□□□ -1.2
LDLR-210ENST00000559340 TSPAN5P62079 268 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 MADCAM1Q13477 382 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 ZNF846Q147U1 533 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 MEF2DQ14814 521 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 PLA1AQ53H76 456 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 ZNF626Q68DY1 528 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 CCDC144NLQ6NUI1 221 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 RBMS3Q6XE24 437 aaKnown RBP7.53□□□□□ -1.2
LDLR-210ENST00000559340 C9orf139Q6ZV77 190 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 Q8N402 240 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 GVQW1Q8N7I0 195 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 OR52L2PQ8NGH6 319 aa7.53□□□□□ -1.2
LDLR-210ENST00000559340 OR10V1Q8NGI7 309 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms