RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 OR3A1P47881 315 aa8.95□□□□□ -0.98
CUX1-217ENST00000558836 LINC00205P59089 165 aa8.95□□□□□ -0.98
CUX1-217ENST00000558836 ZNF146Q15072 292 aa8.95□□□□□ -0.98
CUX1-217ENST00000558836 SRSF7Q16629 238 aaKnown RBP eCLIP8.95□□□□□ -0.98
CUX1-217ENST00000558836 ZNF880Q6PDB4 577 aa8.95□□□□□ -0.98
CUX1-217ENST00000558836 WDR82Q6UXN9 313 aa8.95□□□□□ -0.98
CUX1-217ENST00000558836 FAM185AQ8N0U4 392 aa8.95□□□□□ -0.98
CUX1-217ENST00000558836 OR10V1Q8NGI7 309 aa8.95□□□□□ -0.98
CUX1-217ENST00000558836 TREM2Q9NZC2 230 aa8.95□□□□□ -0.98
CUX1-217ENST00000558836 TAAR3PQ9P1P4 343 aa8.95□□□□□ -0.98
CUX1-217ENST00000558836 POMT1Q9Y6A1 747 aa8.95□□□□□ -0.98
CUX1-217ENST00000558836 IGHV3-43A0A0B4J1X8 118 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 IGSF23A1L1A6 192 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 OR5H1A6NKK0 313 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 FAM74A7A6NL05 159 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 DEFB108AA8MXU0 73 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 CHST1O43916 411 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 IGHV3-13P01766 116 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 IGHV3-7P01780 117 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 SERPINE2P07093 398 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 IGHV3-43DP0DP04 118 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 UCP1P25874 307 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 GABRA2P47869 451 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 ZNF616Q08AN1 781 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 FAM74A3Q4VXF1 159 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 TMEM88Q6PEY1 159 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 ZNF808Q8N4W9 903 aaPredicted RBP8.94□□□□□ -0.98
CUX1-217ENST00000558836 OR52L2PQ8NGH6 319 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 RNASE11Q8TAA1 199 aaKnown RBP8.94□□□□□ -0.98
CUX1-217ENST00000558836 SNIP1Q8TAD8 396 aaKnown RBP8.94□□□□□ -0.98
CUX1-217ENST00000558836 MRGPRDQ8TDS7 321 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 TLNRD1Q9H1K6 362 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 RHOFQ9HBH0 211 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 ATP6V1G2-DDX39BF2Z307 99 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 F8W036 122 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 GPR137BO60478 399 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 MUC1P15941 1255 aaPredicted RBP8.94□□□□□ -0.98
CUX1-217ENST00000558836 VDAC1P21796 283 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 BMP5P22003 454 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 BLOC1S1P78537 153 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 EWSR1Q01844 656 aaKnown RBP eCLIP8.94□□□□□ -0.98
CUX1-217ENST00000558836 EDDM3AQ14507 147 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 ZNF718Q3SXZ3 478 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 NMSQ5H8A3 153 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 Q8IYB0 196 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 OR2C3Q8N628 320 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 TSNAXQ99598 290 aaKnown RBP8.94□□□□□ -0.98
CUX1-217ENST00000558836 C9JQL5 133 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 J3QW42 95 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 P2RY1P47900 373 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 GLIPR1P48060 266 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 FAM27E3Q08E93 113 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 RTP5Q14D33 572 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 Q6ZS92 163 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 TMEM171Q8WVE6 324 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 BOD1Q96IK1 185 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 SMIM8Q96KF7 97 aa8.94□□□□□ -0.98
CUX1-217ENST00000558836 CHD8Q9HCK8 2581 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 IGHV3OR15-7A0A075B7D8 119 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 TRBV6-6A0A0A6YYG2 114 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 WRBO00258 174 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 IGKV1-39P01597 117 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 IGKV1D-39P04432 117 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 CD80P33681 288 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 SSTR5P35346 364 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 SULT1A2P50226 295 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 RND3P61587 244 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 SWI5Q1ZZU3 235 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 FAM201AQ5SY85 155 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 IGF2-ASQ6U949 168 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 UBAC2Q8NBM4 344 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 GPR146Q96CH1 333 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 MMP26Q9NRE1 261 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 SLC25A15Q9Y619 301 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 SVEP1Q4LDE5 3571 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 C12orf77C9JDV5 145 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 H0Y980 276 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 PRH1P02810 166 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 VAMP2P63027 116 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 SRPXP78539 464 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 COL10A1Q03692 680 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 PJVKQ0ZLH3 352 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 EIF5AL1Q6IS14 154 aaKnown RBP8.93□□□□□ -0.98
CUX1-217ENST00000558836 FAM122CQ6P4D5 195 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 BTNL3Q6UXE8 466 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 ACP7Q6ZNF0 438 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 ASCL5Q7RTU5 278 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 PUSL1Q8N0Z8 303 aaKnown RBP8.93□□□□□ -0.98
CUX1-217ENST00000558836 OR5C1Q8NGR4 320 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 RBMXL1Q96E39 390 aaKnown RBP8.93□□□□□ -0.98
CUX1-217ENST00000558836 COQ2Q96H96 371 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 CABLES2Q9BTV7 478 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 ABHD14AQ9BUJ0 271 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 CXXC4Q9H2H0 198 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 IFT22Q9H7X7 185 aa8.93□□□□□ -0.98
CUX1-217ENST00000558836 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.92□□□□□ -0.98
CUX1-217ENST00000558836 RAB19A4D1S5 217 aa8.92□□□□□ -0.98
CUX1-217ENST00000558836 MBD3L4A6NDZ8 208 aaPredicted RBP8.92□□□□□ -0.98
CUX1-217ENST00000558836 MBD3L3A6NE82 208 aaPredicted RBP8.92□□□□□ -0.98
CUX1-217ENST00000558836 MBD3L5A6NJ08 208 aaPredicted RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms