RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TMEM256Q8N2U0 113 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 IFI44Q8TCB0 444 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 TMEM18Q96B42 140 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 FOXB1Q99853 325 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 CLN8Q9UBY8 286 aa9.71□□□□□ -0.86
LDLR-208ENST00000558518 FUT6P51993 359 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 SUMO3P55854 103 aaPredicted RBP9.7□□□□□ -0.86
LDLR-208ENST00000558518 EXT1Q16394 746 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 FAM53AQ6NSI3 398 aaPredicted RBP9.7□□□□□ -0.86
LDLR-208ENST00000558518 TAAR3PQ9P1P4 343 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 TRAPPC2LQ9UL33 140 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 A0A087WWC5 75 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 A8MWP6 167 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 MSX1P28360 303 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 NTF4P34130 210 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 TFPI2P48307 235 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 UCP2P55851 309 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 IL24Q13007 206 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 TEX38Q6PEX7 206 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.7□□□□□ -0.86
LDLR-208ENST00000558518 NABP1Q96AH0 204 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 MS4A10Q96PG2 267 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 IMMP2LQ96T52 175 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 PRRG4Q9BZD6 226 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 VAX2Q9UIW0 290 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 LTBP2Q14767 1821 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 PTGDSP41222 190 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 RAB4BP61018 213 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 SLC38A11Q08AI6 406 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 PRDX4Q13162 271 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 HERPUD1Q15011 391 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 JOSD1Q15040 202 aaPredicted RBP9.7□□□□□ -0.86
LDLR-208ENST00000558518 SLC25A45Q8N413 288 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 ZNF709Q8N972 641 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 SSC4DQ8WTU2 575 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 TBX15Q96SF7 602 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 PARLQ9H300 379 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 FKBP11Q9NYL4 201 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 PPIAL4AQ9Y536 164 aa9.7□□□□□ -0.86
LDLR-208ENST00000558518 ARFGEF3Q5TH69 2177 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 OTX2P32243 289 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 C20orf204Q6ZNR8 217 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 ODF3L1Q8IXM7 274 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 KDF1Q8NAX2 398 aaPredicted RBP9.69□□□□□ -0.86
LDLR-208ENST00000558518 NFAM1Q8NET5 270 aaPredicted RBP9.69□□□□□ -0.86
LDLR-208ENST00000558518 OR2T10Q8NGZ9 312 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 SIGLEC12Q96PQ1 595 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 SNHG12Q9BXW3 62 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 C8orf33Q9H7E9 229 aaPredicted RBP9.69□□□□□ -0.86
LDLR-208ENST00000558518 TRAPPC1Q9Y5R8 145 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 CPAMD8Q8IZJ3 1885 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.69□□□□□ -0.86
LDLR-208ENST00000558518 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.69□□□□□ -0.86
LDLR-208ENST00000558518 NGFP01138 241 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 F2RP25116 425 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 PAX9P55771 341 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 LINC00205P59089 165 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 SPCS3P61009 180 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 HBG1P69891 147 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 HBG2P69892 147 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 SLC35B1P78383 322 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 CXorf67Q86X51 503 aaPredicted RBP9.69□□□□□ -0.86
LDLR-208ENST00000558518 H1FOOQ8IZA3 346 aaPredicted RBP9.69□□□□□ -0.86
LDLR-208ENST00000558518 NDUFAF3Q9BU61 184 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 OCIAD1Q9NX40 245 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 A0A0G2JMM0 328 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 A0A1W2PPB8 328 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 A0A1W2PRS3 328 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 KIR3DP1A8MWS1 328 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 SPTBN2O15020 2390 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 EDDM3BP56851 147 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 MEF2BQ02080 365 aaPredicted RBP9.69□□□□□ -0.86
LDLR-208ENST00000558518 RAB35Q15286 201 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 FFAR4Q5NUL3 377 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 PRR31Q5SQ13 230 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 CLDN23Q96B33 292 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 SAMD10Q9BYL1 202 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 NAT8Q9UHE5 227 aa9.69□□□□□ -0.86
LDLR-208ENST00000558518 GYPAP02724 150 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 TFF1P04155 84 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 CST2P09228 141 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 COL8A2P25067 703 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 MPLP40238 635 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 TNFRSF9Q07011 255 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 GCSAMLQ5JQS6 135 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 PARD6AQ9NPB6 346 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 ASPMQ8IZT6 3477 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 MED12LQ86YW9 2145 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 DEFB108AA8MXU0 73 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 TGOLN2O43493 480 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 FGF5P12034 268 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 CEACAM1P13688 526 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 LMO1P25800 156 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 G6PCP35575 357 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 NUBP1P53384 320 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 RPL23P62829 140 aaKnown RBP9.68□□□□□ -0.86
LDLR-208ENST00000558518 ID3Q02535 119 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 RHBDD2Q6NTF9 364 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 OR10G4Q8NGN3 311 aa9.68□□□□□ -0.86
LDLR-208ENST00000558518 OR10G9Q8NGN4 311 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms