RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.85□□□□□ -0.51
SHMT2-226ENST00000556825 OR10J3Q5JRS4 329 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 LHX8Q68G74 356 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 RTN4IP1Q8WWV3 396 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-226ENST00000556825 VSIRQ9H7M9 311 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 ST20Q9HBF5 79 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 FGF21Q9NSA1 209 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 TSSC4Q9Y5U2 329 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-226ENST00000556825 VWA8A3KMH1 1905 aa11.85□□□□□ -0.51
SHMT2-226ENST00000556825 TRAV9-1A0A075B6T8 112 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 PSMB11A5LHX3 300 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 SOX1O00570 391 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-226ENST00000556825 IFNA5P01569 189 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 SRD5A2P31213 254 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 LCN12Q6JVE5 192 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 MRPL54Q6P161 138 aaKnown RBP11.84□□□□□ -0.51
SHMT2-226ENST00000556825 ZNF793Q6ZN11 406 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 TSTD1Q8NFU3 115 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 BLNKQ8WV28 456 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 SPXQ9BT56 116 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 PELI2Q9HAT8 420 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 COPS7AQ9UBW8 275 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 CES1P1Q9UKY3 287 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 HS3ST3A1Q9Y663 406 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 EML5Q05BV3 1969 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 TNFP01375 233 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 FTH1P19P0C7X4 201 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 WASP42768 502 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 NKX2-1P43699 371 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-226ENST00000556825 GPM6AP51674 278 aa11.84□□□□□ -0.51
SHMT2-226ENST00000556825 RPS4XP62701 263 aaKnown RBP11.84□□□□□ -0.51
SHMT2-226ENST00000556825 MSI2Q96DH6 328 aaKnown RBP11.84□□□□□ -0.51
SHMT2-226ENST00000556825 PLPP3O14495 311 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF207O43670 478 aaKnown RBP11.83□□□□□ -0.52
SHMT2-226ENST00000556825 SRFP11831 508 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF20P17024 532 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 MDH2P40926 338 aaKnown RBP11.83□□□□□ -0.52
SHMT2-226ENST00000556825 FUT6P51993 359 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 OR5A1Q8NGJ0 315 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 OR5P3Q8WZ94 311 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF689Q96CS4 500 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-226ENST00000556825 ARHGAP5-AS1Q96IT6 56 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 UBE2ZQ9H832 354 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-226ENST00000556825 JKAMPQ9P055 326 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 TAAR3PQ9P1P4 343 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 LOC107986453A0A1B0GWG9 222 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 FEZF1A0PJY2 475 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 F2RL2O00254 374 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 LMX1BO60663 402 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 ISG15P05161 165 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 PF4V1P10720 104 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 CLDN17P56750 224 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 ARF1P84077 181 aaKnown RBP11.83□□□□□ -0.52
SHMT2-226ENST00000556825 PSG4Q00888 419 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 ROM1Q03395 351 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 TAF10Q12962 218 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 NUMA1Q14980 2115 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 SLC48A1Q6P1K1 146 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 OR4F5Q8NH21 305 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 GMPPAQ96IJ6 420 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-226ENST00000556825 ABHD14BQ96IU4 210 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 AP1S3Q96PC3 154 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 WDR61Q9GZS3 305 aaKnown RBP11.83□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF286AQ9HBT8 521 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 MMP25Q9NPA2 562 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 SLC17A4Q9Y2C5 497 aa11.83□□□□□ -0.52
SHMT2-226ENST00000556825 C9orf118A6NHY6 69 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 FCN1O00602 326 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 SSSCA1O60232 199 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 MPIG6BO95866 241 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 CMPK1P30085 196 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 ITPRIPL2Q3MIP1 535 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 TMEM164Q5U3C3 297 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 LHX4Q969G2 390 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 BANF2Q9H503 90 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 C6orf106Q9H6K1 298 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-226ENST00000556825 TEX48A0A1B0GUV7 120 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 AGFG2O95081 481 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 BGLAPP02818 100 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 RPL24P83731 157 aaKnown RBP11.82□□□□□ -0.52
SHMT2-226ENST00000556825 TESK1Q15569 626 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 ABCA11PQ4W5N1 156 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 CLLU1OSQ5K130 101 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 PLPP4Q5VZY2 271 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 SLC25A34Q6PIV7 304 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 OR2K2Q8NGT1 345 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 CYYR1Q96J86 154 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 GPER1Q99527 375 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 RTN4RQ9BZR6 473 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 TMEM140Q9NV12 185 aa11.82□□□□□ -0.52
SHMT2-226ENST00000556825 MRPL16Q9NX20 251 aaKnown RBP11.82□□□□□ -0.52
SHMT2-226ENST00000556825 PGCP20142 388 aa11.81□□□□□ -0.52
SHMT2-226ENST00000556825 FBLP22087 321 aaKnown RBP11.81□□□□□ -0.52
SHMT2-226ENST00000556825 C2orf73Q8N5S3 287 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-226ENST00000556825 SCGB1C1Q8TD33 95 aa11.81□□□□□ -0.52
SHMT2-226ENST00000556825 NEIL1Q96FI4 390 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-226ENST00000556825 COMMD5Q9GZQ3 224 aa11.81□□□□□ -0.52
SHMT2-226ENST00000556825 THAP10Q9P2Z0 257 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-226ENST00000556825 TRBV9A0A0B4J1U6 114 aa11.8□□□□□ -0.52
SHMT2-226ENST00000556825 SHISA7A6NL88 538 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms