RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 SOCS1O15524 211 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 AIREO43918 545 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 DIRAS3O95661 229 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 CD3GP09693 182 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 RCC1P18754 421 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 MDKP21741 143 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 SDC2P34741 201 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 KIR2DS4P43632 304 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 ZNF137PP52743 207 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 ZNF816Q0VGE8 651 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 KIR2DS1Q14954 304 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 PLA1AQ53H76 456 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 ZNF880Q6PDB4 577 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 SLC25A48Q6ZT89 311 aaKnown RBP11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 THNSL2Q86YJ6 484 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 OR10R2Q8NGX6 335 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 PIFOQ8TCI5 191 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 WFDC12Q8WWY7 111 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 ARHGAP5-AS1Q96IT6 56 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 CMSS1Q9BQ75 279 aaKnown RBP11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 PECRQ9BY49 303 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 AK3Q9UIJ7 227 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 A0A0A6YYH2 397 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 A6NJ64 397 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 YPEL1O60688 119 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 OR2F2O95006 317 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 GAPDHP04406 335 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 HIST1H1DP16402 221 aaKnown RBP11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 HLA-DRB3P79483 266 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 RELBQ01201 579 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 FAM71F2Q6NXP2 309 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 Q6ZSV7 163 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 SGMS2Q8NHU3 365 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 SETD6Q8TBK2 473 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 PHF21AQ96BD5 680 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 YIPF6Q96EC8 236 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 YPEL2Q96QA6 119 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 ABHD14AQ9BUJ0 271 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 GHITMQ9H3K2 345 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 DAPK2Q9UIK4 370 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 RNF114Q9Y508 228 aa11.57□□□□□ -0.56
CCDC88C-207ENST00000554051 A0A1W2PPI3 338 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 MFNGO00587 321 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 ITGB1BP1O14713 200 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 CHST1O43916 411 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 SERPINB10P48595 397 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 NR2C2APQ86WQ0 139 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 IZUMO1Q8IYV9 350 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 Q8N2B8 174 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 ZNF439Q8NDP4 499 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 OR2AK2Q8NG84 335 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 OR1L1Q8NH94 360 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 LINC01006Q8NI28 216 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 EDARADDQ8WWZ3 215 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 LEAP2Q969E1 77 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 MRPS26Q9BYN8 205 aaKnown RBP11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 PRSS22Q9GZN4 317 aa11.56□□□□□ -0.56
CCDC88C-207ENST00000554051 IGHV3-43A0A0B4J1X8 118 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 RAB27BO00194 218 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 TIMM23O14925 209 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 IGHV3-43DP0DP04 118 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 ZBTB25P24278 435 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 TMEM50BP56557 158 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 PROK1P58294 105 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 PITPNAQ00169 270 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 HABP2Q14520 560 aaPredicted RBP11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 SRSF7Q16629 238 aaKnown RBP eCLIP11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 MORN2Q502X0 79 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 PLAC9Q5JTB6 97 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 OR13F1Q8NGS4 319 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 LGALS14Q8TCE9 139 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 IL1F10Q8WWZ1 152 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 SLC25A33Q9BSK2 321 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 ATG5Q9H1Y0 275 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 Q9N2K0 584 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 RHBDL2Q9NX52 303 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 MOB4Q9Y3A3 225 aa11.55□□□□□ -0.56
CCDC88C-207ENST00000554051 LANCL1O43813 399 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 GSTP1P09211 210 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 SLC2A2P11168 524 aaPredicted RBP11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 DTYMKP23919 212 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 PAX6P26367 422 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 TALDO1P37837 337 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 EFNB2P52799 333 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 MXD1Q05195 221 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 TGIF2LXQ8IUE1 241 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 OR10V1Q8NGI7 309 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 OR4A4PQ8NGN8 299 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 OR56B4Q8NH76 319 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 UBALD1Q8TB05 177 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 RTN4IP1Q8WWV3 396 aaPredicted RBP11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 KCTD12Q96CX2 325 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 RBM14Q96PK6 669 aaKnown RBP11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 PIPOXQ9P0Z9 390 aa11.54□□□□□ -0.56
CCDC88C-207ENST00000554051 IGHV1-3A0A0C4DH29 117 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 SMIM30A4D0T7 59 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 FAM90A9PA6NNJ1 464 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 TRDCB7Z8K6 153 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 HSPA12AO43301 675 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms