RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 A0A1W2PPR1 153 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 MFSD2BA6NFX1 497 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 SLC33A1O00400 549 aaPredicted RBP13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 ACAA1P09110 424 aaPredicted RBP13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 SMCO1Q147U7 214 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 ZNF146Q15072 292 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 LDLRAD3Q86YD5 345 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 STOML3Q8TAV4 291 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 TMEM171Q8WVE6 324 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 TP53RKQ96S44 253 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 SHARPINQ9H0F6 387 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 CXXC4Q9H2H0 198 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 CYTL1Q9NRR1 136 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 TREM2Q9NZC2 230 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 MED13LQ71F56 2210 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 IGKV1D-13A0A0B4J2D9 117 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 DPRXA6NFQ7 191 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 GPR31O00270 319 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 SIAH2O43255 324 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 IGKV1-13P0DP09 117 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 ZNF250P15622 560 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 RND3P61587 244 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 HLA-DRB3P79483 266 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 ZNF818PQ6ZRF7 136 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 TBC1D26Q86UD7 250 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 GAPTQ8N292 157 aa13.9□□□□□ -0.18
CHMP1A-204ENST00000547687 DEDDO75618 318 aa13.89□□□□□ -0.19
CHMP1A-204ENST00000547687 SCGB1D2O95969 90 aa13.89□□□□□ -0.19
CHMP1A-204ENST00000547687 TPT1P13693 172 aaKnown RBP13.89□□□□□ -0.19
CHMP1A-204ENST00000547687 PTAFRP25105 342 aa13.89□□□□□ -0.19
CHMP1A-204ENST00000547687 OR10J5Q8NHC4 309 aa13.89□□□□□ -0.19
CHMP1A-204ENST00000547687 LHFPL5Q8TAF8 219 aa13.89□□□□□ -0.19
CHMP1A-204ENST00000547687 PLPPR1Q8TBJ4 325 aa13.89□□□□□ -0.19
CHMP1A-204ENST00000547687 NDRG3Q9UGV2 375 aa13.89□□□□□ -0.19
CHMP1A-204ENST00000547687 LSM5Q9Y4Y9 91 aaKnown RBP13.89□□□□□ -0.19
CHMP1A-204ENST00000547687 A0A1B0GW55 424 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 ABCD4O14678 606 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 HSD17B6O14756 317 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 DUX4L2P0CJ85 424 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 DUX4L3P0CJ86 424 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 DUX4L4P0CJ87 422 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 DUX4L5P0CJ88 424 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 DUX4L6P0CJ89 424 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 DUX4L7P0CJ90 424 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 HKR1P10072 659 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 SRPXP78539 464 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 SHEQ5VZ18 495 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 FIP1L1Q6UN15 594 aaKnown RBP13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 ZNF497Q6ZNH5 498 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 C11orf53Q8IXP5 236 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 TMEM222Q9H0R3 208 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 HES4Q9HCC6 221 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 CCL28Q9NRJ3 127 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 DUX4Q9UBX2 424 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 UBE2J1Q9Y385 318 aaPredicted RBP13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 IGHV3-13P01766 116 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 KLF3P57682 345 aaPredicted RBP13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 BSPH1Q075Z2 132 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 ZNF826PQ6ZT77 177 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 MOB1BQ7L9L4 216 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 SSX8Q7RTT4 187 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 CCDC28AQ8IWP9 274 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 BAP18Q8IXM2 172 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 KIRREL1Q96J84 757 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 CABLES2Q9BTV7 478 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 ZC4H2Q9NQZ6 224 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 TRAPPC2LQ9UL33 140 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 TMED3Q9Y3Q3 217 aa13.88□□□□□ -0.19
CHMP1A-204ENST00000547687 ACANP16112 2415 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 CHD3Q12873 2000 aaKnown RBP13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 HAND1O96004 215 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 MBPP02686 304 aaPredicted RBP13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 RPS23P62266 143 aaKnown RBP13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 TMEM268Q5VZI3 342 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 CMTM1Q8IZ96 169 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 H1FOOQ8IZA3 346 aaPredicted RBP13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 SLC35G3Q8N808 338 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 OR14J1Q9UGF5 321 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 GLS2Q9UI32 602 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 OR2W1Q9Y3N9 320 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 SESN1Q9Y6P5 492 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 ARID1AO14497 2285 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 DSCAMO60469 2012 aa13.87□□□□□ -0.19
CHMP1A-204ENST00000547687 IGLV3-9A0A075B6K5 115 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 TRAV39A0A0B4J263 110 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 A0A1B0GWJ7 208 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 A6NLC8 198 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 TEX46H3BTG2 121 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 K7EPK0 472 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 SHOXO15266 292 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 RPL12P30050 165 aaKnown RBP13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 FAM71E2Q8N5Q1 922 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 NUP37Q8NFH4 326 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 IL1F10Q8WWZ1 152 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 TMEM56Q96MV1 263 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 MRPL37Q9BZE1 423 aaKnown RBP13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 TLNRD1Q9H1K6 362 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 TMEM56-RWDD3S4R434 201 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 TAAR5O14804 337 aa13.86□□□□□ -0.19
CHMP1A-204ENST00000547687 PRAMEF6Q5VXH4 476 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms