RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 PPP1CCP36873 323 aaKnown RBP6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 ASCL1P50553 236 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 DLK1P80370 383 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 TLE3Q04726 772 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 FMODQ06828 376 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 PCK2Q16822 640 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 LINC00696Q6ZRV3 163 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 PIP4P1Q86T03 277 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 ZNF101Q8IZC7 436 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 ZNF738Q8NE65 137 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 RNF128Q8TEB7 428 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 PSMF1Q92530 271 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 SLC25A31Q9H0C2 315 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 MED29Q9NX70 200 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 ST3GAL6Q9Y274 331 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 A0A1W2PNR3 127 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 MT-CO2P00403 227 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 LCATP04180 440 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 GATA4P43694 442 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 DAP3P51398 398 aaKnown RBP6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 POU3F1Q03052 451 aaPredicted RBP6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 SPEM2Q0P670 501 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 ANKRD55Q3KP44 614 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 PDLIM3Q53GG5 364 aaPredicted RBP6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 C5orf47Q569G3 176 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 TMEM128Q5BJH2 165 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 TMEM268Q5VZI3 342 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 OR4A47Q6IF82 309 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 DHRS13Q6UX07 377 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 ADGRE4PQ86SQ3 457 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 SLC26A10Q8NG04 563 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 ABHD5Q8WTS1 349 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 MCHR2Q969V1 340 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 ZNF775Q96BV0 537 aaPredicted RBP6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 SYT3Q9BQG1 590 aa6.89□□□□□ -1.31
PDLIM5-221ENST00000542407 OR11H12B2RN74 326 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 NPIPA5E9PKD4 350 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 F8WDY8 70 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 WIPF1O43516 503 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 TRAF3IP2O43734 574 aaPredicted RBP6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 SRSF10O75494 262 aaKnown RBP6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 MPZL1O95297 269 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 KNG1P01042 644 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 OMGP23515 440 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 DNASE1L1P49184 302 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 UCP3P55916 312 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 ROM1Q03395 351 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 EIF3IQ13347 325 aaKnown RBP6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 PMS2P11Q13670 270 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 HES3Q5TGS1 186 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 C9orf135Q5VTT2 229 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 C17orf78Q8N4C9 275 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 OR11H1Q8NG94 326 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 OR11H2Q8NH07 326 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 C2orf50Q96LR7 162 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 YPEL4Q96NS1 127 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 SH3BGRL3Q9H299 93 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 ELOVL3Q9HB03 270 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 NPIPA1Q9UND3 350 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 COA3Q9Y2R0 106 aaPredicted RBP6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 LRP12Q9Y561 859 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 RALGAPA1Q6GYQ0 2036 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 HSPB2A8KAH6 182 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 G3V3Y1 287 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 TRAPPC2LH3BP13 241 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 SERPINA7P05543 415 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 CEACAM1P13688 526 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 DSCR4P56555 118 aaPredicted RBP6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 B3GALT5-AS1P59052 145 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 TAS2R31P59538 309 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 SLC35A1P78382 337 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 H3F3AP84243 136 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 HSPB2Q16082 182 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 TMEM241Q24JQ0 296 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 IAH1Q2TAA2 248 aaPredicted RBP6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 TMEM225Q6GV28 225 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 DYRK2Q92630 601 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 SLC25A44Q96H78 314 aaPredicted RBP6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 DCBLD2Q96PD2 775 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 RAB18Q9NP72 206 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 SLC17A5Q9NRA2 495 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 TMEM160Q9NX00 188 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 TMEM14AQ9Y6G1 99 aa6.88□□□□□ -1.31
PDLIM5-221ENST00000542407 NCOR1O75376 2440 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 LOC102725191A0A1B0GVB3 256 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 LRRC3CA6NJW4 275 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 TK1P04183 234 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 PGA3P0DJD8 388 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 FKBP2P26885 142 aaKnown RBP6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 SRSF7Q16629 238 aaKnown RBP eCLIP6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 TMEM182Q6ZP80 229 aaPredicted RBP6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 C4orf45Q96LM5 186 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 C5orf66Q9H5L9 145 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 MEMO1Q9Y316 297 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 TSSC4Q9Y5U2 329 aaPredicted RBP6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 LOC101059948A0A1B0GTJ6 334 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 C21orf140B9A014 251 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 SYT7O43581 403 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 OR7C2O60412 319 aa6.87□□□□□ -1.31
PDLIM5-221ENST00000542407 TNFSF15O95150 251 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms