RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SVOPQ8N4V2 548 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 OR10X1Q8NGY0 326 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 OR56B4Q8NH76 319 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 CT45A3Q8NHU0 189 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 NEDD4LQ96PU5 975 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 FAAP24Q9BTP7 215 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 MMP27Q9H306 513 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 RAB9BQ9NP90 201 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 RRP15Q9Y3B9 282 aaKnown RBP11.31□□□□□ -0.6
USP28-209ENST00000540925 LRRC42Q9Y546 428 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 V9GY05 133 aa11.31□□□□□ -0.6
USP28-209ENST00000540925 NOTCH1P46531 2555 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 TET2Q6N021 2002 aaPredicted RBP11.3□□□□□ -0.6
USP28-209ENST00000540925 TRBV6-6A0A0A6YYG2 114 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 IGHV1-3A0A0C4DH29 117 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 CCRL2O00421 344 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 SOCS1O15524 211 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 SNRNP70P08621 437 aaKnown RBP11.3□□□□□ -0.6
USP28-209ENST00000540925 FAM106CPP0CH98 169 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 VSIG10L2P0DP72 767 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 BLVRBP30043 206 aaPredicted RBP11.3□□□□□ -0.6
USP28-209ENST00000540925 HTD2P86397 168 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 PLA2G7Q13093 441 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 HIST2H2BDQ6DRA6 164 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 Q6ZTK2 550 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 NR2C2APQ86WQ0 139 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 IZUMO1Q8IYV9 350 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 Q8N6K4 173 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 OR51D1Q8NGF3 324 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 RTN4IP1Q8WWV3 396 aaPredicted RBP11.3□□□□□ -0.6
USP28-209ENST00000540925 FAM3DQ96BQ1 224 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 AKR1E2Q96JD6 320 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 PLGRKTQ9HBL7 147 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 HSF4Q9ULV5 492 aa11.3□□□□□ -0.6
USP28-209ENST00000540925 ADARB2-AS1A8MUL3 147 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 M0QZK8 103 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 GAPDHP04406 335 aaKnown RBP11.29□□□□□ -0.6
USP28-209ENST00000540925 FGF9P31371 208 aaPredicted RBP11.29□□□□□ -0.6
USP28-209ENST00000540925 PSMD7P51665 324 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 CLDN12P56749 244 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 OR10A3P58181 314 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 GNMTQ14749 295 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 C2orf68Q2NKX9 166 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 C2orf76Q3KRA6 126 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 MORN2Q502X0 79 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 ZNF773Q6PK81 442 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 CAPSLQ8WWF8 208 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 FCGR1BQ92637 280 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 STEAP1Q9UHE8 339 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 JPT1Q9UK76 154 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 MOB4Q9Y3A3 225 aa11.29□□□□□ -0.6
USP28-209ENST00000540925 TMEM272A0A1B0GTI8 110 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 IFITM5A6NNB3 132 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 CD28P10747 220 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 VDAC2P45880 294 aaPredicted RBP11.28□□□□□ -0.6
USP28-209ENST00000540925 REG1BP48304 166 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 ABCA11PQ4W5N1 156 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 PLAC9Q5JTB6 97 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 ODF3L1Q8IXM7 274 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 PRR18Q8N4B5 295 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 C5orf56Q8N8D9 126 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 OR10V1Q8NGI7 309 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 URM1Q9BTM9 101 aaKnown RBP11.28□□□□□ -0.6
USP28-209ENST00000540925 OR2S2Q9NQN1 319 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 GNG12Q9UBI6 72 aa11.28□□□□□ -0.6
USP28-209ENST00000540925 SH2D7A6NKC9 451 aaPredicted RBP11.27□□□□□ -0.61
USP28-209ENST00000540925 PDCD5O14737 125 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 FGF16O43320 207 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 YPEL1O60688 119 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 FBXO24O75426 580 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 IGKV1D-33P01593 117 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 IGKV1-33P01594 117 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 PPP1CCP36873 323 aaKnown RBP11.27□□□□□ -0.61
USP28-209ENST00000540925 KCTD21Q4G0X4 260 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 TCTEX1D4Q5JR98 221 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 HES5Q5TA89 166 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 MOB1BQ7L9L4 216 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 C11orf44Q8N8P7 122 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 OR52L2PQ8NGH6 319 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 ARHGAP5-AS1Q96IT6 56 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 EAF1Q96JC9 268 aaPredicted RBP11.27□□□□□ -0.61
USP28-209ENST00000540925 YPEL2Q96QA6 119 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 HDHD3Q9BSH5 251 aaPredicted RBP11.27□□□□□ -0.61
USP28-209ENST00000540925 RIMS4Q9H426 269 aaPredicted RBP11.27□□□□□ -0.61
USP28-209ENST00000540925 PLSCR3Q9NRY6 295 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 PLEKHJ1Q9NW61 149 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 KCNIP1Q9NZI2 227 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 AK3Q9UIJ7 227 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 RAB22AQ9UL26 194 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 KCNK7Q9Y2U2 307 aa11.27□□□□□ -0.61
USP28-209ENST00000540925 TXNL1O43396 289 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 LANCL1O43813 399 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 LPLP06858 475 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 TMEM11P17152 192 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 IL3RAP26951 378 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 PSMB9P28065 219 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 CD1BP29016 333 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 RANBP1P43487 201 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 VEGFCP49767 419 aa11.26□□□□□ -0.61
USP28-209ENST00000540925 CD83Q01151 205 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms